Experiment: R2A with Nickel (II) chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS01380 and CA265_RS01385 are separated by 187 nucleotides CA265_RS01385 and CA265_RS01390 overlap by 17 nucleotides CA265_RS01390 and CA265_RS01395 are separated by 39 nucleotides CA265_RS01395 and CA265_RS01400 overlap by 4 nucleotides
CA265_RS01380: CA265_RS01380 - hypothetical protein, at 348,256 to 348,438
_RS01380
CA265_RS01385: CA265_RS01385 - cytochrome C, at 348,626 to 349,393
_RS01385
CA265_RS01390: CA265_RS01390 - cytochrome c oxidase accessory protein CcoG, at 349,377 to 350,756
_RS01390
CA265_RS01395: CA265_RS01395 - hypothetical protein, at 350,796 to 351,269
_RS01395
CA265_RS01400: CA265_RS01400 - hypothetical protein, at 351,266 to 351,967
_RS01400
Position (kb) 349
350
351 Strain fitness (log2 ratio) -1
0
1
2 at 348.399 kb on + strand, within CA265_RS01380 at 348.448 kb on - strand at 348.462 kb on + strand at 348.556 kb on + strand at 348.557 kb on - strand at 348.620 kb on - strand at 348.642 kb on + strand at 348.643 kb on - strand at 348.656 kb on + strand at 348.684 kb on + strand at 348.794 kb on + strand, within CA265_RS01385 at 348.795 kb on - strand, within CA265_RS01385 at 348.905 kb on + strand, within CA265_RS01385 at 348.971 kb on + strand, within CA265_RS01385 at 348.991 kb on + strand, within CA265_RS01385 at 349.024 kb on + strand, within CA265_RS01385 at 349.025 kb on - strand, within CA265_RS01385 at 349.055 kb on - strand, within CA265_RS01385 at 349.131 kb on - strand, within CA265_RS01385 at 349.162 kb on - strand, within CA265_RS01385 at 349.256 kb on - strand, within CA265_RS01385 at 349.261 kb on - strand, within CA265_RS01385 at 349.330 kb on - strand at 349.456 kb on - strand at 349.456 kb on - strand at 349.457 kb on + strand at 349.479 kb on + strand at 349.479 kb on + strand at 349.554 kb on - strand, within CA265_RS01390 at 349.710 kb on - strand, within CA265_RS01390 at 349.721 kb on - strand, within CA265_RS01390 at 349.738 kb on - strand, within CA265_RS01390 at 349.875 kb on + strand, within CA265_RS01390 at 349.876 kb on - strand, within CA265_RS01390 at 349.894 kb on + strand, within CA265_RS01390 at 349.901 kb on + strand, within CA265_RS01390 at 349.902 kb on - strand, within CA265_RS01390 at 349.909 kb on + strand, within CA265_RS01390 at 349.969 kb on + strand, within CA265_RS01390 at 349.969 kb on + strand, within CA265_RS01390 at 349.989 kb on + strand, within CA265_RS01390 at 350.025 kb on + strand, within CA265_RS01390 at 350.132 kb on - strand, within CA265_RS01390 at 350.187 kb on - strand, within CA265_RS01390 at 350.187 kb on - strand, within CA265_RS01390 at 350.204 kb on + strand, within CA265_RS01390 at 350.205 kb on - strand, within CA265_RS01390 at 350.264 kb on + strand, within CA265_RS01390 at 350.265 kb on - strand, within CA265_RS01390 at 350.333 kb on + strand, within CA265_RS01390 at 350.359 kb on - strand, within CA265_RS01390 at 350.369 kb on - strand, within CA265_RS01390 at 350.381 kb on - strand, within CA265_RS01390 at 350.420 kb on + strand, within CA265_RS01390 at 350.456 kb on - strand, within CA265_RS01390 at 350.456 kb on - strand, within CA265_RS01390 at 350.555 kb on + strand, within CA265_RS01390 at 350.633 kb on - strand at 350.711 kb on + strand at 350.720 kb on + strand at 350.720 kb on + strand at 350.840 kb on + strand at 350.861 kb on - strand, within CA265_RS01395 at 350.877 kb on - strand, within CA265_RS01395 at 350.901 kb on - strand, within CA265_RS01395 at 350.912 kb on + strand, within CA265_RS01395 at 350.913 kb on - strand, within CA265_RS01395 at 350.924 kb on - strand, within CA265_RS01395 at 350.976 kb on + strand, within CA265_RS01395 at 350.978 kb on + strand, within CA265_RS01395 at 351.008 kb on + strand, within CA265_RS01395 at 351.009 kb on - strand, within CA265_RS01395 at 351.041 kb on + strand, within CA265_RS01395 at 351.074 kb on + strand, within CA265_RS01395 at 351.074 kb on + strand, within CA265_RS01395 at 351.085 kb on - strand, within CA265_RS01395 at 351.098 kb on - strand, within CA265_RS01395 at 351.113 kb on + strand, within CA265_RS01395 at 351.128 kb on + strand, within CA265_RS01395 at 351.265 kb on + strand at 351.328 kb on - strand at 351.343 kb on + strand, within CA265_RS01400 at 351.426 kb on + strand, within CA265_RS01400 at 351.427 kb on - strand, within CA265_RS01400 at 351.429 kb on - strand, within CA265_RS01400 at 351.450 kb on + strand, within CA265_RS01400 at 351.460 kb on - strand, within CA265_RS01400 at 351.481 kb on + strand, within CA265_RS01400 at 351.524 kb on - strand, within CA265_RS01400 at 351.558 kb on - strand, within CA265_RS01400 at 351.585 kb on + strand, within CA265_RS01400 at 351.591 kb on + strand, within CA265_RS01400 at 351.591 kb on + strand, within CA265_RS01400 at 351.594 kb on + strand, within CA265_RS01400 at 351.595 kb on - strand, within CA265_RS01400 at 351.619 kb on + strand, within CA265_RS01400 at 351.624 kb on + strand, within CA265_RS01400 at 351.742 kb on + strand, within CA265_RS01400 at 351.748 kb on + strand, within CA265_RS01400
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.3 mM remove 348,399 + CA265_RS01380 0.78 +0.2 348,448 - +0.6 348,462 + -0.0 348,556 + -1.5 348,557 - +0.3 348,620 - -1.3 348,642 + -1.0 348,643 - -1.3 348,656 + -1.0 348,684 + -1.0 348,794 + CA265_RS01385 0.22 -0.4 348,795 - CA265_RS01385 0.22 +0.3 348,905 + CA265_RS01385 0.36 -0.1 348,971 + CA265_RS01385 0.45 +0.4 348,991 + CA265_RS01385 0.48 -0.6 349,024 + CA265_RS01385 0.52 +0.2 349,025 - CA265_RS01385 0.52 -0.2 349,055 - CA265_RS01385 0.56 -0.4 349,131 - CA265_RS01385 0.66 +2.4 349,162 - CA265_RS01385 0.70 -0.4 349,256 - CA265_RS01385 0.82 -0.1 349,261 - CA265_RS01385 0.83 -0.2 349,330 - +0.3 349,456 - +0.3 349,456 - -0.1 349,457 + -1.5 349,479 + -0.9 349,479 + -0.7 349,554 - CA265_RS01390 0.13 +0.1 349,710 - CA265_RS01390 0.24 +0.7 349,721 - CA265_RS01390 0.25 +0.7 349,738 - CA265_RS01390 0.26 +0.1 349,875 + CA265_RS01390 0.36 -0.4 349,876 - CA265_RS01390 0.36 +0.8 349,894 + CA265_RS01390 0.37 +0.1 349,901 + CA265_RS01390 0.38 -0.6 349,902 - CA265_RS01390 0.38 +0.5 349,909 + CA265_RS01390 0.39 -0.3 349,969 + CA265_RS01390 0.43 -0.1 349,969 + CA265_RS01390 0.43 +0.3 349,989 + CA265_RS01390 0.44 -1.4 350,025 + CA265_RS01390 0.47 +1.0 350,132 - CA265_RS01390 0.55 +0.4 350,187 - CA265_RS01390 0.59 -0.3 350,187 - CA265_RS01390 0.59 +0.1 350,204 + CA265_RS01390 0.60 -0.8 350,205 - CA265_RS01390 0.60 -1.0 350,264 + CA265_RS01390 0.64 -0.1 350,265 - CA265_RS01390 0.64 +0.2 350,333 + CA265_RS01390 0.69 +0.4 350,359 - CA265_RS01390 0.71 +0.6 350,369 - CA265_RS01390 0.72 +0.5 350,381 - CA265_RS01390 0.73 +0.3 350,420 + CA265_RS01390 0.76 +0.1 350,456 - CA265_RS01390 0.78 -0.3 350,456 - CA265_RS01390 0.78 +0.3 350,555 + CA265_RS01390 0.85 +1.4 350,633 - +0.4 350,711 + -1.0 350,720 + -0.1 350,720 + -0.4 350,840 + -0.1 350,861 - CA265_RS01395 0.14 +0.1 350,877 - CA265_RS01395 0.17 +0.6 350,901 - CA265_RS01395 0.22 +0.4 350,912 + CA265_RS01395 0.24 -0.1 350,913 - CA265_RS01395 0.25 +0.8 350,924 - CA265_RS01395 0.27 -0.0 350,976 + CA265_RS01395 0.38 -0.1 350,978 + CA265_RS01395 0.38 -0.1 351,008 + CA265_RS01395 0.45 +1.7 351,009 - CA265_RS01395 0.45 +0.8 351,041 + CA265_RS01395 0.52 +0.1 351,074 + CA265_RS01395 0.59 +1.5 351,074 + CA265_RS01395 0.59 +0.1 351,085 - CA265_RS01395 0.61 -0.6 351,098 - CA265_RS01395 0.64 +0.1 351,113 + CA265_RS01395 0.67 +0.9 351,128 + CA265_RS01395 0.70 +0.1 351,265 + +0.1 351,328 - +0.4 351,343 + CA265_RS01400 0.11 -0.4 351,426 + CA265_RS01400 0.23 +0.3 351,427 - CA265_RS01400 0.23 +0.5 351,429 - CA265_RS01400 0.23 -0.6 351,450 + CA265_RS01400 0.26 -0.9 351,460 - CA265_RS01400 0.28 -0.2 351,481 + CA265_RS01400 0.31 -0.4 351,524 - CA265_RS01400 0.37 -0.9 351,558 - CA265_RS01400 0.42 +0.2 351,585 + CA265_RS01400 0.45 -0.7 351,591 + CA265_RS01400 0.46 -0.1 351,591 + CA265_RS01400 0.46 -0.2 351,594 + CA265_RS01400 0.47 +0.6 351,595 - CA265_RS01400 0.47 +0.0 351,619 + CA265_RS01400 0.50 +0.1 351,624 + CA265_RS01400 0.51 +0.7 351,742 + CA265_RS01400 0.68 -0.2 351,748 + CA265_RS01400 0.69 +0.1
Or see this region's nucleotide sequence