Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_26125 and AO356_26130 are separated by 69 nucleotides AO356_26130 and AO356_26135 are separated by 236 nucleotides AO356_26135 and AO356_26140 are separated by 53 nucleotides AO356_26140 and AO356_26145 are separated by 107 nucleotides
AO356_26125: AO356_26125 - ABC transporter substrate-binding protein, at 5,914,079 to 5,914,861
_26125
AO356_26130: AO356_26130 - hypothetical protein, at 5,914,931 to 5,915,356
_26130
AO356_26135: AO356_26135 - AraC family transcriptional regulator, at 5,915,593 to 5,916,429
_26135
AO356_26140: AO356_26140 - lysine transporter LysE, at 5,916,483 to 5,917,085
_26140
AO356_26145: AO356_26145 - aldehyde dehydrogenase, at 5,917,193 to 5,918,626
_26145
Position (kb) 5915
5916
5917 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5914.715 kb on + strand, within AO356_26125 at 5914.715 kb on + strand, within AO356_26125 at 5914.715 kb on + strand, within AO356_26125 at 5914.716 kb on - strand, within AO356_26125 at 5914.743 kb on + strand, within AO356_26125 at 5914.811 kb on + strand at 5914.812 kb on - strand at 5914.812 kb on - strand at 5914.812 kb on - strand at 5914.832 kb on + strand at 5914.832 kb on + strand at 5914.833 kb on - strand at 5914.847 kb on - strand at 5914.851 kb on - strand at 5914.851 kb on - strand at 5914.947 kb on + strand at 5915.213 kb on - strand, within AO356_26130 at 5915.453 kb on - strand at 5915.470 kb on + strand at 5915.471 kb on - strand at 5915.474 kb on + strand at 5915.475 kb on - strand at 5915.475 kb on - strand at 5915.475 kb on - strand at 5915.677 kb on + strand, within AO356_26135 at 5915.677 kb on + strand, within AO356_26135 at 5915.678 kb on - strand, within AO356_26135 at 5915.678 kb on - strand, within AO356_26135 at 5915.678 kb on - strand, within AO356_26135 at 5915.854 kb on + strand, within AO356_26135 at 5915.854 kb on + strand, within AO356_26135 at 5915.855 kb on - strand, within AO356_26135 at 5916.036 kb on + strand, within AO356_26135 at 5916.131 kb on - strand, within AO356_26135 at 5916.250 kb on + strand, within AO356_26135 at 5916.251 kb on - strand, within AO356_26135 at 5916.251 kb on - strand, within AO356_26135 at 5916.251 kb on - strand, within AO356_26135 at 5916.251 kb on - strand, within AO356_26135 at 5916.494 kb on - strand at 5916.494 kb on - strand at 5916.531 kb on - strand at 5916.549 kb on - strand, within AO356_26140 at 5916.549 kb on - strand, within AO356_26140 at 5916.566 kb on + strand, within AO356_26140 at 5916.566 kb on + strand, within AO356_26140 at 5916.567 kb on - strand, within AO356_26140 at 5916.972 kb on + strand, within AO356_26140 at 5916.972 kb on + strand, within AO356_26140 at 5917.091 kb on - strand at 5917.206 kb on + strand at 5917.227 kb on + strand at 5917.227 kb on + strand at 5917.228 kb on - strand at 5917.228 kb on - strand at 5917.228 kb on - strand at 5917.228 kb on - strand at 5917.273 kb on + strand at 5917.274 kb on - strand at 5917.387 kb on - strand, within AO356_26145 at 5917.387 kb on - strand, within AO356_26145 at 5917.387 kb on - strand, within AO356_26145
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 5,914,715 + AO356_26125 0.81 -0.1 5,914,715 + AO356_26125 0.81 -0.3 5,914,715 + AO356_26125 0.81 +0.0 5,914,716 - AO356_26125 0.81 -0.5 5,914,743 + AO356_26125 0.85 +0.0 5,914,811 + +0.7 5,914,812 - +0.6 5,914,812 - +1.8 5,914,812 - +1.4 5,914,832 + +0.1 5,914,832 + -1.1 5,914,833 - -0.1 5,914,847 - -0.5 5,914,851 - +0.3 5,914,851 - +0.9 5,914,947 + +0.3 5,915,213 - AO356_26130 0.66 +1.2 5,915,453 - +0.9 5,915,470 + +0.7 5,915,471 - +0.7 5,915,474 + +2.1 5,915,475 - +0.4 5,915,475 - +0.6 5,915,475 - -1.0 5,915,677 + AO356_26135 0.10 -0.5 5,915,677 + AO356_26135 0.10 -0.4 5,915,678 - AO356_26135 0.10 +0.7 5,915,678 - AO356_26135 0.10 -0.3 5,915,678 - AO356_26135 0.10 -0.2 5,915,854 + AO356_26135 0.31 -0.9 5,915,854 + AO356_26135 0.31 +0.3 5,915,855 - AO356_26135 0.31 -0.3 5,916,036 + AO356_26135 0.53 -1.1 5,916,131 - AO356_26135 0.64 +0.6 5,916,250 + AO356_26135 0.78 +1.6 5,916,251 - AO356_26135 0.79 +1.0 5,916,251 - AO356_26135 0.79 -0.8 5,916,251 - AO356_26135 0.79 +0.6 5,916,251 - AO356_26135 0.79 +0.2 5,916,494 - +0.1 5,916,494 - -1.0 5,916,531 - +0.2 5,916,549 - AO356_26140 0.11 +0.4 5,916,549 - AO356_26140 0.11 +0.3 5,916,566 + AO356_26140 0.14 -1.3 5,916,566 + AO356_26140 0.14 -0.2 5,916,567 - AO356_26140 0.14 -1.8 5,916,972 + AO356_26140 0.81 -0.6 5,916,972 + AO356_26140 0.81 -0.6 5,917,091 - +0.0 5,917,206 + -0.7 5,917,227 + +1.4 5,917,227 + +0.6 5,917,228 - +0.7 5,917,228 - +0.4 5,917,228 - -0.4 5,917,228 - -0.5 5,917,273 + -0.2 5,917,274 - +0.1 5,917,387 - AO356_26145 0.14 +0.6 5,917,387 - AO356_26145 0.14 -0.5 5,917,387 - AO356_26145 0.14 +0.0
Or see this region's nucleotide sequence