Experiment: D-Sorbitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000565 and ABIE53_000566 are separated by 287 nucleotides ABIE53_000566 and ABIE53_000567 are separated by 28 nucleotides ABIE53_000567 and ABIE53_000568 are separated by 114 nucleotides
ABIE53_000565: ABIE53_000565 - nitronate monooxygenase, at 617,143 to 618,102
_000565
ABIE53_000566: ABIE53_000566 - haloacetate dehalogenase, at 618,390 to 619,280
_000566
ABIE53_000567: ABIE53_000567 - Lrp/AsnC family leucine-responsive transcriptional regulator, at 619,309 to 619,779
_000567
ABIE53_000568: ABIE53_000568 - drug/metabolite transporter (DMT)-like permease, at 619,894 to 620,793
_000568
Position (kb) 618
619
620 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 617.402 kb on + strand, within ABIE53_000565 at 617.402 kb on + strand, within ABIE53_000565 at 617.402 kb on + strand, within ABIE53_000565 at 617.403 kb on - strand, within ABIE53_000565 at 617.403 kb on - strand, within ABIE53_000565 at 617.434 kb on - strand, within ABIE53_000565 at 617.444 kb on + strand, within ABIE53_000565 at 617.444 kb on + strand, within ABIE53_000565 at 617.444 kb on + strand, within ABIE53_000565 at 617.444 kb on + strand, within ABIE53_000565 at 617.444 kb on + strand, within ABIE53_000565 at 617.444 kb on + strand, within ABIE53_000565 at 617.445 kb on - strand, within ABIE53_000565 at 617.445 kb on - strand, within ABIE53_000565 at 617.445 kb on - strand, within ABIE53_000565 at 617.445 kb on - strand, within ABIE53_000565 at 617.445 kb on - strand, within ABIE53_000565 at 617.445 kb on - strand, within ABIE53_000565 at 617.445 kb on - strand, within ABIE53_000565 at 617.495 kb on + strand, within ABIE53_000565 at 617.495 kb on + strand, within ABIE53_000565 at 617.495 kb on + strand, within ABIE53_000565 at 617.495 kb on + strand, within ABIE53_000565 at 617.495 kb on + strand, within ABIE53_000565 at 617.495 kb on + strand, within ABIE53_000565 at 617.495 kb on + strand, within ABIE53_000565 at 617.495 kb on + strand, within ABIE53_000565 at 617.496 kb on - strand, within ABIE53_000565 at 617.496 kb on - strand, within ABIE53_000565 at 617.496 kb on - strand, within ABIE53_000565 at 617.496 kb on - strand, within ABIE53_000565 at 617.496 kb on - strand, within ABIE53_000565 at 617.496 kb on - strand, within ABIE53_000565 at 617.496 kb on - strand, within ABIE53_000565 at 617.496 kb on - strand, within ABIE53_000565 at 617.496 kb on - strand, within ABIE53_000565 at 617.496 kb on - strand, within ABIE53_000565 at 617.735 kb on + strand, within ABIE53_000565 at 617.735 kb on + strand, within ABIE53_000565 at 617.735 kb on + strand, within ABIE53_000565 at 617.735 kb on + strand, within ABIE53_000565 at 617.735 kb on + strand, within ABIE53_000565 at 617.736 kb on - strand, within ABIE53_000565 at 617.736 kb on - strand, within ABIE53_000565 at 617.736 kb on - strand, within ABIE53_000565 at 617.736 kb on - strand, within ABIE53_000565 at 617.736 kb on - strand, within ABIE53_000565 at 617.736 kb on - strand, within ABIE53_000565 at 617.736 kb on - strand, within ABIE53_000565 at 617.736 kb on - strand, within ABIE53_000565 at 617.815 kb on + strand, within ABIE53_000565 at 617.815 kb on + strand, within ABIE53_000565 at 618.033 kb on - strand at 618.150 kb on + strand at 618.151 kb on - strand at 618.163 kb on + strand at 618.206 kb on + strand at 618.206 kb on + strand at 618.206 kb on + strand at 618.206 kb on + strand at 618.206 kb on + strand at 618.206 kb on + strand at 618.206 kb on + strand at 618.206 kb on + strand at 618.206 kb on + strand at 618.206 kb on + strand at 618.206 kb on + strand at 618.206 kb on + strand at 618.206 kb on + strand at 618.207 kb on - strand at 618.207 kb on - strand at 618.207 kb on - strand at 618.207 kb on - strand at 618.207 kb on - strand at 618.207 kb on - strand at 618.207 kb on - strand at 618.207 kb on - strand at 618.207 kb on - strand at 618.207 kb on - strand at 618.207 kb on - strand at 618.207 kb on - strand at 618.207 kb on - strand at 618.207 kb on - strand at 618.207 kb on - strand at 618.207 kb on - strand at 618.207 kb on - strand at 618.207 kb on - strand at 618.279 kb on - strand at 618.307 kb on + strand at 618.307 kb on + strand at 618.307 kb on + strand at 618.307 kb on + strand at 618.307 kb on + strand at 618.307 kb on + strand at 618.307 kb on + strand at 618.307 kb on + strand at 618.307 kb on + strand at 618.308 kb on - strand at 618.308 kb on - strand at 618.308 kb on - strand at 618.308 kb on - strand at 618.308 kb on - strand at 618.308 kb on - strand at 618.308 kb on - strand at 618.353 kb on + strand at 618.353 kb on + strand at 618.353 kb on + strand at 618.354 kb on - strand at 618.354 kb on - strand at 618.354 kb on - strand at 618.354 kb on - strand at 618.440 kb on + strand at 618.440 kb on + strand at 618.621 kb on + strand, within ABIE53_000566 at 618.621 kb on + strand, within ABIE53_000566 at 618.622 kb on - strand, within ABIE53_000566 at 618.798 kb on + strand, within ABIE53_000566 at 618.798 kb on + strand, within ABIE53_000566 at 618.799 kb on - strand, within ABIE53_000566 at 618.799 kb on - strand, within ABIE53_000566 at 618.799 kb on - strand, within ABIE53_000566 at 618.799 kb on - strand, within ABIE53_000566 at 618.831 kb on + strand, within ABIE53_000566 at 618.831 kb on + strand, within ABIE53_000566 at 618.831 kb on + strand, within ABIE53_000566 at 618.831 kb on + strand, within ABIE53_000566 at 618.831 kb on + strand, within ABIE53_000566 at 618.831 kb on + strand, within ABIE53_000566 at 618.831 kb on + strand, within ABIE53_000566 at 618.832 kb on - strand, within ABIE53_000566 at 618.832 kb on - strand, within ABIE53_000566 at 618.832 kb on - strand, within ABIE53_000566 at 618.832 kb on - strand, within ABIE53_000566 at 618.832 kb on - strand, within ABIE53_000566 at 618.832 kb on - strand, within ABIE53_000566 at 618.832 kb on - strand, within ABIE53_000566 at 618.903 kb on + strand, within ABIE53_000566 at 618.903 kb on + strand, within ABIE53_000566 at 618.904 kb on - strand, within ABIE53_000566 at 618.904 kb on - strand, within ABIE53_000566 at 619.024 kb on - strand, within ABIE53_000566 at 619.082 kb on + strand, within ABIE53_000566 at 619.082 kb on + strand, within ABIE53_000566 at 619.082 kb on + strand, within ABIE53_000566 at 619.082 kb on + strand, within ABIE53_000566 at 619.082 kb on + strand, within ABIE53_000566 at 619.082 kb on + strand, within ABIE53_000566 at 619.083 kb on - strand, within ABIE53_000566 at 619.083 kb on - strand, within ABIE53_000566 at 619.083 kb on - strand, within ABIE53_000566 at 619.083 kb on - strand, within ABIE53_000566 at 619.083 kb on - strand, within ABIE53_000566 at 619.083 kb on - strand, within ABIE53_000566 at 619.083 kb on - strand, within ABIE53_000566 at 619.083 kb on - strand, within ABIE53_000566 at 619.083 kb on - strand, within ABIE53_000566 at 619.083 kb on - strand, within ABIE53_000566 at 619.210 kb on - strand at 619.210 kb on - strand at 619.210 kb on - strand at 619.278 kb on + strand at 619.278 kb on + strand at 619.279 kb on - strand at 619.427 kb on + strand, within ABIE53_000567 at 619.428 kb on - strand, within ABIE53_000567 at 619.720 kb on + strand, within ABIE53_000567 at 619.796 kb on + strand at 619.819 kb on - strand at 619.825 kb on - strand at 619.825 kb on - strand at 619.832 kb on + strand at 619.832 kb on + strand at 619.832 kb on + strand at 619.832 kb on + strand at 619.833 kb on - strand at 619.833 kb on - strand at 619.833 kb on - strand at 619.850 kb on - strand at 619.850 kb on - strand at 619.853 kb on + strand at 619.853 kb on + strand at 619.853 kb on + strand at 619.853 kb on + strand at 619.853 kb on + strand at 619.854 kb on - strand at 619.868 kb on - strand at 619.868 kb on - strand at 619.868 kb on - strand at 619.998 kb on + strand, within ABIE53_000568 at 619.998 kb on + strand, within ABIE53_000568 at 619.998 kb on + strand, within ABIE53_000568 at 619.998 kb on + strand, within ABIE53_000568 at 619.999 kb on - strand, within ABIE53_000568 at 619.999 kb on - strand, within ABIE53_000568 at 619.999 kb on - strand, within ABIE53_000568 at 619.999 kb on - strand, within ABIE53_000568 at 620.048 kb on + strand, within ABIE53_000568 at 620.049 kb on - strand, within ABIE53_000568 at 620.162 kb on - strand, within ABIE53_000568 at 620.162 kb on - strand, within ABIE53_000568 at 620.197 kb on + strand, within ABIE53_000568 at 620.198 kb on - strand, within ABIE53_000568 at 620.198 kb on - strand, within ABIE53_000568 at 620.198 kb on - strand, within ABIE53_000568 at 620.273 kb on + strand, within ABIE53_000568 at 620.273 kb on + strand, within ABIE53_000568 at 620.274 kb on - strand, within ABIE53_000568 at 620.274 kb on - strand, within ABIE53_000568 at 620.274 kb on - strand, within ABIE53_000568 at 620.274 kb on - strand, within ABIE53_000568
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol (C) remove 617,402 + ABIE53_000565 0.27 -0.3 617,402 + ABIE53_000565 0.27 -1.6 617,402 + ABIE53_000565 0.27 -2.1 617,403 - ABIE53_000565 0.27 +0.7 617,403 - ABIE53_000565 0.27 +2.1 617,434 - ABIE53_000565 0.30 +2.0 617,444 + ABIE53_000565 0.31 -0.2 617,444 + ABIE53_000565 0.31 -1.2 617,444 + ABIE53_000565 0.31 -0.5 617,444 + ABIE53_000565 0.31 +1.4 617,444 + ABIE53_000565 0.31 -1.6 617,444 + ABIE53_000565 0.31 -0.7 617,445 - ABIE53_000565 0.31 -1.2 617,445 - ABIE53_000565 0.31 +0.7 617,445 - ABIE53_000565 0.31 +2.4 617,445 - ABIE53_000565 0.31 -1.2 617,445 - ABIE53_000565 0.31 -0.4 617,445 - ABIE53_000565 0.31 -1.0 617,445 - ABIE53_000565 0.31 +1.7 617,495 + ABIE53_000565 0.37 -1.6 617,495 + ABIE53_000565 0.37 -0.5 617,495 + ABIE53_000565 0.37 -1.5 617,495 + ABIE53_000565 0.37 -1.1 617,495 + ABIE53_000565 0.37 -0.9 617,495 + ABIE53_000565 0.37 -0.4 617,495 + ABIE53_000565 0.37 -0.1 617,495 + ABIE53_000565 0.37 +0.4 617,496 - ABIE53_000565 0.37 -0.7 617,496 - ABIE53_000565 0.37 +0.2 617,496 - ABIE53_000565 0.37 +0.2 617,496 - ABIE53_000565 0.37 +0.4 617,496 - ABIE53_000565 0.37 +1.4 617,496 - ABIE53_000565 0.37 -0.6 617,496 - ABIE53_000565 0.37 -0.3 617,496 - ABIE53_000565 0.37 -0.3 617,496 - ABIE53_000565 0.37 -0.9 617,496 - ABIE53_000565 0.37 -0.6 617,735 + ABIE53_000565 0.62 -1.3 617,735 + ABIE53_000565 0.62 +0.4 617,735 + ABIE53_000565 0.62 -0.2 617,735 + ABIE53_000565 0.62 -0.6 617,735 + ABIE53_000565 0.62 -1.3 617,736 - ABIE53_000565 0.62 -1.7 617,736 - ABIE53_000565 0.62 +3.0 617,736 - ABIE53_000565 0.62 +1.1 617,736 - ABIE53_000565 0.62 -0.9 617,736 - ABIE53_000565 0.62 +0.8 617,736 - ABIE53_000565 0.62 -0.6 617,736 - ABIE53_000565 0.62 +0.4 617,736 - ABIE53_000565 0.62 +0.0 617,815 + ABIE53_000565 0.70 +1.0 617,815 + ABIE53_000565 0.70 +0.7 618,033 - +2.0 618,150 + -0.1 618,151 - -0.6 618,163 + -1.5 618,206 + -0.5 618,206 + -0.5 618,206 + +2.0 618,206 + -0.2 618,206 + -0.5 618,206 + -0.4 618,206 + +0.2 618,206 + +0.1 618,206 + -1.2 618,206 + -1.0 618,206 + +0.4 618,206 + -0.3 618,206 + -0.6 618,207 - -0.5 618,207 - +0.1 618,207 - -1.3 618,207 - +0.4 618,207 - -2.1 618,207 - +0.2 618,207 - +0.4 618,207 - +0.6 618,207 - -1.0 618,207 - -0.3 618,207 - -0.4 618,207 - -0.6 618,207 - -0.8 618,207 - -0.2 618,207 - +0.6 618,207 - +1.2 618,207 - -0.5 618,207 - -1.5 618,279 - -0.4 618,307 + -0.6 618,307 + -0.1 618,307 + +1.0 618,307 + +1.1 618,307 + -0.0 618,307 + +1.0 618,307 + +0.1 618,307 + +1.2 618,307 + -0.2 618,308 - +1.4 618,308 - +4.3 618,308 - -0.0 618,308 - +1.0 618,308 - -0.6 618,308 - +0.8 618,308 - -0.9 618,353 + -0.3 618,353 + +0.4 618,353 + -0.8 618,354 - -1.5 618,354 - -1.0 618,354 - +1.0 618,354 - +0.4 618,440 + +1.2 618,440 + +1.0 618,621 + ABIE53_000566 0.26 +0.7 618,621 + ABIE53_000566 0.26 -0.4 618,622 - ABIE53_000566 0.26 -0.3 618,798 + ABIE53_000566 0.46 +2.0 618,798 + ABIE53_000566 0.46 -0.3 618,799 - ABIE53_000566 0.46 +0.3 618,799 - ABIE53_000566 0.46 -0.0 618,799 - ABIE53_000566 0.46 -0.2 618,799 - ABIE53_000566 0.46 -0.5 618,831 + ABIE53_000566 0.49 -1.8 618,831 + ABIE53_000566 0.49 +0.4 618,831 + ABIE53_000566 0.49 -0.3 618,831 + ABIE53_000566 0.49 -2.2 618,831 + ABIE53_000566 0.49 +1.6 618,831 + ABIE53_000566 0.49 -0.8 618,831 + ABIE53_000566 0.49 -0.6 618,832 - ABIE53_000566 0.50 -1.1 618,832 - ABIE53_000566 0.50 +1.7 618,832 - ABIE53_000566 0.50 +1.8 618,832 - ABIE53_000566 0.50 +0.3 618,832 - ABIE53_000566 0.50 +2.0 618,832 - ABIE53_000566 0.50 -0.1 618,832 - ABIE53_000566 0.50 +1.7 618,903 + ABIE53_000566 0.58 +1.0 618,903 + ABIE53_000566 0.58 -1.0 618,904 - ABIE53_000566 0.58 +0.4 618,904 - ABIE53_000566 0.58 +2.0 619,024 - ABIE53_000566 0.71 +0.6 619,082 + ABIE53_000566 0.78 -1.5 619,082 + ABIE53_000566 0.78 -0.3 619,082 + ABIE53_000566 0.78 -0.6 619,082 + ABIE53_000566 0.78 -0.2 619,082 + ABIE53_000566 0.78 -1.2 619,082 + ABIE53_000566 0.78 +0.7 619,083 - ABIE53_000566 0.78 +0.3 619,083 - ABIE53_000566 0.78 -0.0 619,083 - ABIE53_000566 0.78 +0.4 619,083 - ABIE53_000566 0.78 -0.0 619,083 - ABIE53_000566 0.78 -0.0 619,083 - ABIE53_000566 0.78 -0.5 619,083 - ABIE53_000566 0.78 -0.3 619,083 - ABIE53_000566 0.78 -0.1 619,083 - ABIE53_000566 0.78 +3.0 619,083 - ABIE53_000566 0.78 -1.5 619,210 - +1.2 619,210 - +0.1 619,210 - -1.1 619,278 + +2.0 619,278 + +0.3 619,279 - -0.6 619,427 + ABIE53_000567 0.25 +0.2 619,428 - ABIE53_000567 0.25 -2.6 619,720 + ABIE53_000567 0.87 -1.7 619,796 + -1.0 619,819 - -0.6 619,825 - -1.6 619,825 - +0.4 619,832 + -1.6 619,832 + +0.7 619,832 + -0.2 619,832 + +0.5 619,833 - -0.4 619,833 - -0.7 619,833 - +0.8 619,850 - -0.2 619,850 - -1.5 619,853 + -0.6 619,853 + -0.5 619,853 + +1.1 619,853 + +1.7 619,853 + +0.4 619,854 - -1.0 619,868 - +0.7 619,868 - -0.2 619,868 - -0.3 619,998 + ABIE53_000568 0.12 +4.0 619,998 + ABIE53_000568 0.12 -0.2 619,998 + ABIE53_000568 0.12 -0.6 619,998 + ABIE53_000568 0.12 -0.1 619,999 - ABIE53_000568 0.12 +2.7 619,999 - ABIE53_000568 0.12 +2.0 619,999 - ABIE53_000568 0.12 -0.4 619,999 - ABIE53_000568 0.12 +0.4 620,048 + ABIE53_000568 0.17 -1.9 620,049 - ABIE53_000568 0.17 -0.4 620,162 - ABIE53_000568 0.30 +3.0 620,162 - ABIE53_000568 0.30 -0.3 620,197 + ABIE53_000568 0.34 -1.6 620,198 - ABIE53_000568 0.34 -0.0 620,198 - ABIE53_000568 0.34 -0.4 620,198 - ABIE53_000568 0.34 -0.8 620,273 + ABIE53_000568 0.42 -1.5 620,273 + ABIE53_000568 0.42 -0.8 620,274 - ABIE53_000568 0.42 +1.0 620,274 - ABIE53_000568 0.42 -0.0 620,274 - ABIE53_000568 0.42 -0.4 620,274 - ABIE53_000568 0.42 -0.7
Or see this region's nucleotide sequence