Strain Fitness in Sinorhizobium meliloti 1021 around SMc04145

Experiment: Beta-Lactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04146 and SMc04145 are separated by 147 nucleotidesSMc04145 and SMc04144 are separated by 63 nucleotides SMc04146: SMc04146 - phosphoketolase, at 123,688 to 126,141 SMc04146 SMc04145: SMc04145 - hypothetical protein, at 126,289 to 127,074 SMc04145 SMc04144: SMc04144 - dihydroxy-acid dehydratase, at 127,138 to 128,862 SMc04144 Position (kb) 126 127 128Strain fitness (log2 ratio) -2 -1 0 1 2at 125.322 kb on + strand, within SMc04146at 125.405 kb on + strand, within SMc04146at 125.406 kb on - strand, within SMc04146at 125.448 kb on + strand, within SMc04146at 125.448 kb on + strand, within SMc04146at 125.449 kb on - strand, within SMc04146at 125.449 kb on - strand, within SMc04146at 125.481 kb on - strand, within SMc04146at 125.499 kb on + strand, within SMc04146at 125.637 kb on - strand, within SMc04146at 125.655 kb on - strand, within SMc04146at 125.783 kb on + strand, within SMc04146at 125.793 kb on + strand, within SMc04146at 125.795 kb on + strand, within SMc04146at 125.795 kb on + strand, within SMc04146at 125.795 kb on + strand, within SMc04146at 125.795 kb on + strand, within SMc04146at 125.795 kb on + strand, within SMc04146at 125.796 kb on - strand, within SMc04146at 125.796 kb on - strand, within SMc04146at 125.796 kb on - strand, within SMc04146at 125.796 kb on - strand, within SMc04146at 125.810 kb on + strand, within SMc04146at 125.858 kb on + strand, within SMc04146at 125.858 kb on + strand, within SMc04146at 125.858 kb on + strand, within SMc04146at 125.859 kb on - strand, within SMc04146at 125.859 kb on - strand, within SMc04146at 125.906 kb on + strandat 125.906 kb on + strandat 125.906 kb on + strandat 125.907 kb on - strandat 125.907 kb on - strandat 125.907 kb on - strandat 125.907 kb on - strandat 125.907 kb on - strandat 126.008 kb on + strandat 126.008 kb on + strandat 126.029 kb on + strandat 126.030 kb on - strandat 126.030 kb on - strandat 126.143 kb on + strandat 126.143 kb on + strandat 126.143 kb on + strandat 126.143 kb on + strandat 126.144 kb on - strandat 126.144 kb on - strandat 126.144 kb on - strandat 126.170 kb on - strandat 126.213 kb on - strandat 126.330 kb on - strandat 126.432 kb on + strand, within SMc04145at 126.608 kb on + strand, within SMc04145at 126.617 kb on + strand, within SMc04145at 126.618 kb on - strand, within SMc04145at 126.618 kb on - strand, within SMc04145at 126.618 kb on - strand, within SMc04145at 126.618 kb on - strand, within SMc04145at 126.629 kb on + strand, within SMc04145at 126.803 kb on + strand, within SMc04145at 126.803 kb on + strand, within SMc04145at 126.803 kb on + strand, within SMc04145at 126.803 kb on + strand, within SMc04145at 126.803 kb on + strand, within SMc04145at 126.804 kb on - strand, within SMc04145at 127.055 kb on - strandat 127.060 kb on + strandat 127.078 kb on + strandat 127.078 kb on + strandat 127.078 kb on + strandat 127.079 kb on - strandat 127.079 kb on - strandat 127.164 kb on + strandat 127.239 kb on - strandat 127.250 kb on + strandat 127.389 kb on - strand, within SMc04144at 127.622 kb on + strand, within SMc04144at 127.622 kb on + strand, within SMc04144at 127.892 kb on + strand, within SMc04144at 127.893 kb on - strand, within SMc04144at 127.895 kb on + strand, within SMc04144at 127.895 kb on + strand, within SMc04144at 127.896 kb on - strand, within SMc04144at 127.896 kb on - strand, within SMc04144

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose (C)
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125,322 + SMc04146 0.67 +0.0
125,405 + SMc04146 0.70 -0.9
125,406 - SMc04146 0.70 -0.2
125,448 + SMc04146 0.72 -0.1
125,448 + SMc04146 0.72 -0.4
125,449 - SMc04146 0.72 +0.2
125,449 - SMc04146 0.72 -0.7
125,481 - SMc04146 0.73 -0.1
125,499 + SMc04146 0.74 +0.3
125,637 - SMc04146 0.79 +0.6
125,655 - SMc04146 0.80 -0.3
125,783 + SMc04146 0.85 +0.3
125,793 + SMc04146 0.86 +0.2
125,795 + SMc04146 0.86 -0.1
125,795 + SMc04146 0.86 -1.0
125,795 + SMc04146 0.86 -1.8
125,795 + SMc04146 0.86 -0.2
125,795 + SMc04146 0.86 +1.3
125,796 - SMc04146 0.86 -0.4
125,796 - SMc04146 0.86 -0.1
125,796 - SMc04146 0.86 +0.5
125,796 - SMc04146 0.86 +0.5
125,810 + SMc04146 0.86 -0.3
125,858 + SMc04146 0.88 +0.2
125,858 + SMc04146 0.88 +0.3
125,858 + SMc04146 0.88 -0.6
125,859 - SMc04146 0.88 -2.3
125,859 - SMc04146 0.88 +0.3
125,906 + -0.3
125,906 + -0.6
125,906 + +0.1
125,907 - +0.1
125,907 - -0.2
125,907 - -0.0
125,907 - +2.5
125,907 - +0.1
126,008 + +1.6
126,008 + -0.9
126,029 + -0.3
126,030 - +0.3
126,030 - +0.0
126,143 + +0.2
126,143 + +0.2
126,143 + +0.7
126,143 + -0.1
126,144 - -0.4
126,144 - -0.3
126,144 - +0.3
126,170 - +0.3
126,213 - -0.4
126,330 - -0.0
126,432 + SMc04145 0.18 +0.5
126,608 + SMc04145 0.41 +0.1
126,617 + SMc04145 0.42 -0.0
126,618 - SMc04145 0.42 -0.5
126,618 - SMc04145 0.42 +0.8
126,618 - SMc04145 0.42 -1.7
126,618 - SMc04145 0.42 +0.2
126,629 + SMc04145 0.43 +0.2
126,803 + SMc04145 0.65 -0.5
126,803 + SMc04145 0.65 +0.8
126,803 + SMc04145 0.65 -0.3
126,803 + SMc04145 0.65 -0.0
126,803 + SMc04145 0.65 -0.1
126,804 - SMc04145 0.66 -0.4
127,055 - +0.3
127,060 + +0.4
127,078 + -0.3
127,078 + +0.2
127,078 + -0.4
127,079 - -0.9
127,079 - -0.9
127,164 + -0.2
127,239 - -0.3
127,250 + +0.8
127,389 - SMc04144 0.15 -0.4
127,622 + SMc04144 0.28 +0.4
127,622 + SMc04144 0.28 +0.3
127,892 + SMc04144 0.44 +0.5
127,893 - SMc04144 0.44 +0.3
127,895 + SMc04144 0.44 +0.3
127,895 + SMc04144 0.44 +0.4
127,896 - SMc04144 0.44 +0.2
127,896 - SMc04144 0.44 +0.3

Or see this region's nucleotide sequence