Strain Fitness in Sinorhizobium meliloti 1021 around SMc03064

Experiment: Beta-Lactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03063 and SMc03064 are separated by 29 nucleotidesSMc03064 and SMc03065 are separated by 19 nucleotides SMc03063: SMc03063 - ABC transporter for D-maltose/D-trehalose/sucrose, permease component 2 (AglG) (from data), at 760,396 to 761,538 SMc03063 SMc03064: SMc03064 - alpha-glucosidase, at 761,568 to 763,223 SMc03064 SMc03065: SMc03065 - ABC transporter for D-maltose/D-trehalose/sucrose, ATPase component (AglK) (from data), at 763,243 to 764,331 SMc03065 Position (kb) 761 762 763 764Strain fitness (log2 ratio) -2 -1 0 1 2 3at 760.818 kb on + strand, within SMc03063at 760.855 kb on + strand, within SMc03063at 760.855 kb on + strand, within SMc03063at 760.856 kb on - strand, within SMc03063at 760.856 kb on - strand, within SMc03063at 760.856 kb on - strand, within SMc03063at 760.964 kb on - strand, within SMc03063at 761.071 kb on + strand, within SMc03063at 761.071 kb on + strand, within SMc03063at 761.072 kb on - strand, within SMc03063at 761.072 kb on - strand, within SMc03063at 761.072 kb on - strand, within SMc03063at 761.073 kb on + strand, within SMc03063at 761.073 kb on + strand, within SMc03063at 761.073 kb on + strand, within SMc03063at 761.073 kb on + strand, within SMc03063at 761.074 kb on - strand, within SMc03063at 761.074 kb on - strand, within SMc03063at 761.113 kb on + strand, within SMc03063at 761.113 kb on + strand, within SMc03063at 761.113 kb on + strand, within SMc03063at 761.113 kb on + strand, within SMc03063at 761.113 kb on + strand, within SMc03063at 761.113 kb on + strand, within SMc03063at 761.113 kb on + strand, within SMc03063at 761.113 kb on + strand, within SMc03063at 761.114 kb on - strand, within SMc03063at 761.114 kb on - strand, within SMc03063at 761.114 kb on - strand, within SMc03063at 761.114 kb on - strand, within SMc03063at 761.114 kb on - strand, within SMc03063at 761.114 kb on - strand, within SMc03063at 761.114 kb on - strand, within SMc03063at 761.114 kb on - strand, within SMc03063at 761.114 kb on - strand, within SMc03063at 761.115 kb on + strand, within SMc03063at 761.115 kb on + strand, within SMc03063at 761.115 kb on + strand, within SMc03063at 761.164 kb on + strand, within SMc03063at 761.165 kb on - strand, within SMc03063at 761.165 kb on - strand, within SMc03063at 761.165 kb on - strand, within SMc03063at 761.179 kb on + strand, within SMc03063at 761.180 kb on - strand, within SMc03063at 761.637 kb on + strandat 761.637 kb on + strandat 761.638 kb on - strandat 761.638 kb on - strandat 761.805 kb on + strandat 761.805 kb on + strand, within SMc03064at 761.806 kb on - strand, within SMc03064at 761.806 kb on - strand, within SMc03064at 761.912 kb on + strand, within SMc03064at 761.912 kb on + strand, within SMc03064at 761.913 kb on - strand, within SMc03064at 761.979 kb on + strand, within SMc03064at 761.979 kb on + strand, within SMc03064at 761.979 kb on + strand, within SMc03064at 761.979 kb on + strand, within SMc03064at 761.979 kb on + strand, within SMc03064at 761.980 kb on - strand, within SMc03064at 762.079 kb on - strand, within SMc03064at 762.081 kb on + strand, within SMc03064at 762.081 kb on + strand, within SMc03064at 762.125 kb on + strand, within SMc03064at 762.301 kb on - strand, within SMc03064at 762.302 kb on + strand, within SMc03064at 762.303 kb on - strand, within SMc03064at 762.303 kb on - strand, within SMc03064at 762.306 kb on + strand, within SMc03064at 762.306 kb on + strand, within SMc03064at 762.307 kb on - strand, within SMc03064at 762.307 kb on - strand, within SMc03064at 762.307 kb on - strand, within SMc03064at 762.317 kb on + strandat 762.317 kb on + strand, within SMc03064at 762.317 kb on + strand, within SMc03064at 762.317 kb on + strand, within SMc03064at 762.318 kb on - strand, within SMc03064at 762.322 kb on - strand, within SMc03064at 762.450 kb on + strand, within SMc03064at 762.450 kb on + strand, within SMc03064at 762.450 kb on + strand, within SMc03064at 762.451 kb on - strand, within SMc03064at 762.709 kb on - strand, within SMc03064at 762.709 kb on - strand, within SMc03064at 762.709 kb on - strand, within SMc03064at 762.709 kb on - strand, within SMc03064at 762.751 kb on - strand, within SMc03064at 762.771 kb on + strand, within SMc03064at 762.771 kb on + strand, within SMc03064at 762.771 kb on + strand, within SMc03064at 762.772 kb on - strand, within SMc03064at 763.166 kb on - strandat 763.166 kb on - strandat 763.295 kb on + strandat 763.347 kb on - strandat 763.407 kb on - strand, within SMc03065at 763.492 kb on + strand, within SMc03065at 763.493 kb on - strand, within SMc03065at 763.493 kb on - strand, within SMc03065at 763.501 kb on + strand, within SMc03065at 763.509 kb on + strand, within SMc03065at 763.509 kb on + strand, within SMc03065at 763.509 kb on + strand, within SMc03065at 763.510 kb on - strand, within SMc03065at 763.600 kb on - strand, within SMc03065at 763.810 kb on + strand, within SMc03065at 763.810 kb on + strand, within SMc03065at 763.810 kb on + strand, within SMc03065at 763.810 kb on + strand, within SMc03065at 763.810 kb on + strand, within SMc03065at 763.811 kb on - strand, within SMc03065at 763.811 kb on - strand, within SMc03065at 763.910 kb on - strand, within SMc03065at 764.185 kb on + strand, within SMc03065at 764.185 kb on + strand, within SMc03065at 764.186 kb on - strand, within SMc03065at 764.186 kb on - strand, within SMc03065

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose (C)
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760,818 + SMc03063 0.37 -0.7
760,855 + SMc03063 0.40 -0.4
760,855 + SMc03063 0.40 -0.8
760,856 - SMc03063 0.40 -1.1
760,856 - SMc03063 0.40 -1.2
760,856 - SMc03063 0.40 -2.0
760,964 - SMc03063 0.50 -0.9
761,071 + SMc03063 0.59 -1.5
761,071 + SMc03063 0.59 -0.7
761,072 - SMc03063 0.59 -1.7
761,072 - SMc03063 0.59 -1.5
761,072 - SMc03063 0.59 -0.6
761,073 + SMc03063 0.59 -1.6
761,073 + SMc03063 0.59 -1.5
761,073 + SMc03063 0.59 -1.3
761,073 + SMc03063 0.59 -2.1
761,074 - SMc03063 0.59 -0.8
761,074 - SMc03063 0.59 -1.3
761,113 + SMc03063 0.63 -0.9
761,113 + SMc03063 0.63 -0.0
761,113 + SMc03063 0.63 -0.7
761,113 + SMc03063 0.63 -0.6
761,113 + SMc03063 0.63 -0.5
761,113 + SMc03063 0.63 -0.2
761,113 + SMc03063 0.63 -0.6
761,113 + SMc03063 0.63 -2.4
761,114 - SMc03063 0.63 -0.9
761,114 - SMc03063 0.63 -1.8
761,114 - SMc03063 0.63 -1.0
761,114 - SMc03063 0.63 -0.8
761,114 - SMc03063 0.63 -0.4
761,114 - SMc03063 0.63 -0.1
761,114 - SMc03063 0.63 -0.5
761,114 - SMc03063 0.63 -0.8
761,114 - SMc03063 0.63 -0.6
761,115 + SMc03063 0.63 +0.3
761,115 + SMc03063 0.63 -0.8
761,115 + SMc03063 0.63 -1.4
761,164 + SMc03063 0.67 -0.8
761,165 - SMc03063 0.67 +0.1
761,165 - SMc03063 0.67 -1.6
761,165 - SMc03063 0.67 -0.6
761,179 + SMc03063 0.69 -0.8
761,180 - SMc03063 0.69 -0.5
761,637 + +0.2
761,637 + -0.2
761,638 - -0.5
761,638 - -1.2
761,805 + +0.3
761,805 + SMc03064 0.14 -0.1
761,806 - SMc03064 0.14 -0.1
761,806 - SMc03064 0.14 -0.4
761,912 + SMc03064 0.21 -2.3
761,912 + SMc03064 0.21 -0.2
761,913 - SMc03064 0.21 -1.2
761,979 + SMc03064 0.25 -0.6
761,979 + SMc03064 0.25 -0.2
761,979 + SMc03064 0.25 -0.1
761,979 + SMc03064 0.25 -0.7
761,979 + SMc03064 0.25 -0.2
761,980 - SMc03064 0.25 +0.5
762,079 - SMc03064 0.31 -1.3
762,081 + SMc03064 0.31 -0.0
762,081 + SMc03064 0.31 -0.1
762,125 + SMc03064 0.34 +0.1
762,301 - SMc03064 0.44 +1.1
762,302 + SMc03064 0.44 -1.5
762,303 - SMc03064 0.44 -0.6
762,303 - SMc03064 0.44 -1.1
762,306 + SMc03064 0.45 +0.8
762,306 + SMc03064 0.45 +0.7
762,307 - SMc03064 0.45 -1.0
762,307 - SMc03064 0.45 +0.5
762,307 - SMc03064 0.45 -0.6
762,317 + +2.9
762,317 + SMc03064 0.45 +0.2
762,317 + SMc03064 0.45 -0.2
762,317 + SMc03064 0.45 -0.1
762,318 - SMc03064 0.45 -1.9
762,322 - SMc03064 0.46 -0.9
762,450 + SMc03064 0.53 +0.2
762,450 + SMc03064 0.53 -0.4
762,450 + SMc03064 0.53 -0.3
762,451 - SMc03064 0.53 -0.9
762,709 - SMc03064 0.69 -1.6
762,709 - SMc03064 0.69 -1.5
762,709 - SMc03064 0.69 +1.2
762,709 - SMc03064 0.69 +0.1
762,751 - SMc03064 0.71 -1.4
762,771 + SMc03064 0.73 +0.1
762,771 + SMc03064 0.73 +1.9
762,771 + SMc03064 0.73 +0.1
762,772 - SMc03064 0.73 -0.9
763,166 - -1.7
763,166 - -0.3
763,295 + +0.4
763,347 - +0.3
763,407 - SMc03065 0.15 -0.8
763,492 + SMc03065 0.23 -0.8
763,493 - SMc03065 0.23 -0.5
763,493 - SMc03065 0.23 +0.2
763,501 + SMc03065 0.24 -0.9
763,509 + SMc03065 0.24 +0.1
763,509 + SMc03065 0.24 -0.6
763,509 + SMc03065 0.24 -0.7
763,510 - SMc03065 0.25 -1.4
763,600 - SMc03065 0.33 +0.6
763,810 + SMc03065 0.52 -1.4
763,810 + SMc03065 0.52 -1.0
763,810 + SMc03065 0.52 -0.7
763,810 + SMc03065 0.52 -1.2
763,810 + SMc03065 0.52 -0.9
763,811 - SMc03065 0.52 -0.5
763,811 - SMc03065 0.52 -1.5
763,910 - SMc03065 0.61 -1.7
764,185 + SMc03065 0.87 -0.4
764,185 + SMc03065 0.87 -1.9
764,186 - SMc03065 0.87 +1.1
764,186 - SMc03065 0.87 -0.2

Or see this region's nucleotide sequence