Strain Fitness in Sinorhizobium meliloti 1021 around SMc01458

Experiment: Beta-Lactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01457 and SMc01458 overlap by 4 nucleotidesSMc01458 and SMc01459 are separated by 303 nucleotides SMc01457: SMc01457 - transport transmembrane protein, at 2,300,845 to 2,303,979 SMc01457 SMc01458: SMc01458 - transporter, at 2,303,976 to 2,305,172 SMc01458 SMc01459: SMc01459 - hypothetical protein, at 2,305,476 to 2,306,297 SMc01459 Position (kb) 2303 2304 2305 2306Strain fitness (log2 ratio) -1 0 1at 2303.294 kb on + strand, within SMc01457at 2303.295 kb on - strand, within SMc01457at 2303.295 kb on - strand, within SMc01457at 2303.295 kb on - strand, within SMc01457at 2303.295 kb on - strand, within SMc01457at 2304.185 kb on + strand, within SMc01458at 2304.186 kb on - strand, within SMc01458at 2304.523 kb on + strand, within SMc01458at 2304.531 kb on + strand, within SMc01458at 2304.531 kb on + strand, within SMc01458at 2304.531 kb on + strand, within SMc01458at 2304.531 kb on + strand, within SMc01458at 2304.531 kb on + strand, within SMc01458at 2304.532 kb on - strand, within SMc01458at 2304.532 kb on - strand, within SMc01458at 2304.533 kb on + strand, within SMc01458at 2304.533 kb on + strand, within SMc01458at 2304.534 kb on - strand, within SMc01458at 2304.863 kb on + strand, within SMc01458at 2305.303 kb on + strandat 2305.397 kb on + strandat 2305.398 kb on - strandat 2305.591 kb on + strand, within SMc01459at 2306.105 kb on + strand, within SMc01459at 2306.105 kb on + strand, within SMc01459at 2306.106 kb on - strand, within SMc01459at 2306.151 kb on + strand, within SMc01459

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose (C)
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2,303,294 + SMc01457 0.78 +0.6
2,303,295 - SMc01457 0.78 +0.1
2,303,295 - SMc01457 0.78 +0.2
2,303,295 - SMc01457 0.78 -0.7
2,303,295 - SMc01457 0.78 -0.3
2,304,185 + SMc01458 0.17 -0.8
2,304,186 - SMc01458 0.18 +0.1
2,304,523 + SMc01458 0.46 -0.2
2,304,531 + SMc01458 0.46 -0.0
2,304,531 + SMc01458 0.46 +0.3
2,304,531 + SMc01458 0.46 +0.2
2,304,531 + SMc01458 0.46 +0.3
2,304,531 + SMc01458 0.46 -0.3
2,304,532 - SMc01458 0.46 +0.0
2,304,532 - SMc01458 0.46 +0.3
2,304,533 + SMc01458 0.47 -0.1
2,304,533 + SMc01458 0.47 +1.6
2,304,534 - SMc01458 0.47 +0.4
2,304,863 + SMc01458 0.74 +0.0
2,305,303 + -0.3
2,305,397 + +0.5
2,305,398 - -1.2
2,305,591 + SMc01459 0.14 -0.4
2,306,105 + SMc01459 0.77 -0.0
2,306,105 + SMc01459 0.77 -0.2
2,306,106 - SMc01459 0.77 -0.2
2,306,151 + SMc01459 0.82 -1.4

Or see this region's nucleotide sequence