Strain Fitness in Sinorhizobium meliloti 1021 around SMc00605

Experiment: Beta-Lactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00604 and SMc00605 are separated by 245 nucleotidesSMc00605 and SMc00606 overlap by 4 nucleotidesSMc00606 and SMc00607 are separated by 53 nucleotides SMc00604: SMc00604 - outer membrane protein, at 1,275,457 to 1,276,095 SMc00604 SMc00605: SMc00605 - hypothetical protein, at 1,276,341 to 1,276,949 SMc00605 SMc00606: SMc00606 - ribonuclease, at 1,276,946 to 1,277,704 SMc00606 SMc00607: SMc00607 - signal peptide protein, at 1,277,758 to 1,278,201 SMc00607 Position (kb) 1276 1277Strain fitness (log2 ratio) -2 -1 0 1at 1276.156 kb on + strandat 1276.157 kb on - strandat 1276.361 kb on - strandat 1276.750 kb on + strand, within SMc00605at 1276.751 kb on - strand, within SMc00605at 1276.918 kb on + strandat 1276.918 kb on + strandat 1276.919 kb on + strandat 1276.923 kb on + strandat 1276.923 kb on + strandat 1276.924 kb on - strandat 1277.074 kb on + strand, within SMc00606at 1277.224 kb on - strand, within SMc00606at 1277.288 kb on - strand, within SMc00606at 1277.288 kb on - strand, within SMc00606at 1277.308 kb on - strand, within SMc00606at 1277.358 kb on + strand, within SMc00606at 1277.358 kb on + strand, within SMc00606at 1277.359 kb on - strand, within SMc00606at 1277.359 kb on - strand, within SMc00606at 1277.499 kb on + strand, within SMc00606at 1277.499 kb on + strand, within SMc00606at 1277.499 kb on + strand, within SMc00606at 1277.500 kb on - strand, within SMc00606at 1277.500 kb on - strand, within SMc00606at 1277.792 kb on + strandat 1277.792 kb on + strandat 1277.792 kb on + strandat 1277.793 kb on - strandat 1277.793 kb on - strandat 1277.793 kb on - strandat 1277.793 kb on - strandat 1277.793 kb on - strandat 1277.826 kb on + strand, within SMc00607at 1277.827 kb on - strand, within SMc00607at 1277.915 kb on + strand, within SMc00607at 1277.915 kb on + strand, within SMc00607at 1277.916 kb on - strand, within SMc00607at 1277.921 kb on + strand, within SMc00607at 1277.922 kb on - strand, within SMc00607at 1277.945 kb on + strand, within SMc00607

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose (C)
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1,276,156 + +0.2
1,276,157 - +0.2
1,276,361 - -0.1
1,276,750 + SMc00605 0.67 -1.1
1,276,751 - SMc00605 0.67 -0.7
1,276,918 + -1.4
1,276,918 + +0.2
1,276,919 + +1.0
1,276,923 + +0.2
1,276,923 + +0.8
1,276,924 - +0.0
1,277,074 + SMc00606 0.17 +0.1
1,277,224 - SMc00606 0.37 -0.2
1,277,288 - SMc00606 0.45 -0.1
1,277,288 - SMc00606 0.45 -2.0
1,277,308 - SMc00606 0.48 -0.3
1,277,358 + SMc00606 0.54 -0.1
1,277,358 + SMc00606 0.54 +0.0
1,277,359 - SMc00606 0.54 +0.1
1,277,359 - SMc00606 0.54 -0.1
1,277,499 + SMc00606 0.73 +0.2
1,277,499 + SMc00606 0.73 -0.6
1,277,499 + SMc00606 0.73 -0.1
1,277,500 - SMc00606 0.73 -0.6
1,277,500 - SMc00606 0.73 -1.3
1,277,792 + +0.0
1,277,792 + +0.0
1,277,792 + +0.8
1,277,793 - -0.5
1,277,793 - +0.1
1,277,793 - -1.0
1,277,793 - -0.5
1,277,793 - +0.8
1,277,826 + SMc00607 0.15 -0.1
1,277,827 - SMc00607 0.16 +0.0
1,277,915 + SMc00607 0.35 -0.3
1,277,915 + SMc00607 0.35 +0.8
1,277,916 - SMc00607 0.36 -0.6
1,277,921 + SMc00607 0.37 -0.5
1,277,922 - SMc00607 0.37 +1.1
1,277,945 + SMc00607 0.42 +0.3

Or see this region's nucleotide sequence