Experiment: Beta-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa2093 and SMa2095 overlap by 4 nucleotides SMa2095 and SMa2097 overlap by 4 nucleotides
SMa2093: SMa2093 - desulfurization enzyme, at 1,180,657 to 1,181,691
SMa2093
SMa2095: SMa2095 - hypothetical protein, at 1,181,688 to 1,182,566
SMa2095
SMa2097: SMa2097 - oxidoreductase, at 1,182,563 to 1,183,813
SMa2097
Position (kb)
1181
1182
1183 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1180.818 kb on + strand, within SMa2093 at 1180.819 kb on - strand, within SMa2093 at 1180.904 kb on + strand, within SMa2093 at 1180.911 kb on - strand, within SMa2093 at 1180.911 kb on - strand, within SMa2093 at 1180.940 kb on + strand, within SMa2093 at 1180.941 kb on - strand, within SMa2093 at 1181.454 kb on + strand, within SMa2093 at 1181.454 kb on + strand, within SMa2093 at 1182.034 kb on - strand, within SMa2095 at 1182.154 kb on + strand, within SMa2095 at 1182.155 kb on - strand, within SMa2095 at 1182.204 kb on + strand, within SMa2095 at 1182.428 kb on - strand, within SMa2095 at 1182.520 kb on + strand at 1182.520 kb on + strand at 1182.570 kb on + strand at 1182.571 kb on - strand at 1182.689 kb on + strand, within SMa2097 at 1182.690 kb on - strand, within SMa2097 at 1182.690 kb on - strand, within SMa2097 at 1182.690 kb on - strand, within SMa2097 at 1182.874 kb on + strand, within SMa2097 at 1182.874 kb on + strand, within SMa2097 at 1182.875 kb on - strand, within SMa2097 at 1182.875 kb on - strand, within SMa2097 at 1182.880 kb on + strand, within SMa2097 at 1182.881 kb on - strand, within SMa2097 at 1182.881 kb on - strand, within SMa2097 at 1182.881 kb on - strand, within SMa2097 at 1182.883 kb on - strand, within SMa2097 at 1183.340 kb on + strand, within SMa2097 at 1183.340 kb on + strand, within SMa2097 at 1183.340 kb on + strand, within SMa2097 at 1183.340 kb on + strand, within SMa2097 at 1183.341 kb on - strand, within SMa2097 at 1183.341 kb on - strand, within SMa2097 at 1183.361 kb on + strand, within SMa2097 at 1183.441 kb on + strand, within SMa2097 at 1183.441 kb on + strand, within SMa2097
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose (C) remove 1,180,818 + SMa2093 0.16 -0.2 1,180,819 - SMa2093 0.16 +0.3 1,180,904 + SMa2093 0.24 -0.3 1,180,911 - SMa2093 0.25 -0.2 1,180,911 - SMa2093 0.25 +0.1 1,180,940 + SMa2093 0.27 -2.9 1,180,941 - SMa2093 0.27 +0.5 1,181,454 + SMa2093 0.77 -0.2 1,181,454 + SMa2093 0.77 -0.9 1,182,034 - SMa2095 0.39 +0.9 1,182,154 + SMa2095 0.53 -0.1 1,182,155 - SMa2095 0.53 +0.5 1,182,204 + SMa2095 0.59 -0.4 1,182,428 - SMa2095 0.84 +0.1 1,182,520 + +0.1 1,182,520 + -0.4 1,182,570 + -0.5 1,182,571 - -0.2 1,182,689 + SMa2097 0.10 -0.6 1,182,690 - SMa2097 0.10 +0.5 1,182,690 - SMa2097 0.10 +0.7 1,182,690 - SMa2097 0.10 +0.8 1,182,874 + SMa2097 0.25 -1.2 1,182,874 + SMa2097 0.25 +0.1 1,182,875 - SMa2097 0.25 -0.1 1,182,875 - SMa2097 0.25 -0.5 1,182,880 + SMa2097 0.25 +0.4 1,182,881 - SMa2097 0.25 -0.8 1,182,881 - SMa2097 0.25 +0.6 1,182,881 - SMa2097 0.25 -0.1 1,182,883 - SMa2097 0.26 +0.1 1,183,340 + SMa2097 0.62 -0.1 1,183,340 + SMa2097 0.62 -0.1 1,183,340 + SMa2097 0.62 -0.0 1,183,340 + SMa2097 0.62 +0.9 1,183,341 - SMa2097 0.62 -0.1 1,183,341 - SMa2097 0.62 -0.1 1,183,361 + SMa2097 0.64 +0.1 1,183,441 + SMa2097 0.70 +0.3 1,183,441 + SMa2097 0.70 -0.6
Or see this region's nucleotide sequence