Strain Fitness in Sinorhizobium meliloti 1021 around SMa2095

Experiment: Beta-Lactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2093 and SMa2095 overlap by 4 nucleotidesSMa2095 and SMa2097 overlap by 4 nucleotides SMa2093: SMa2093 - desulfurization enzyme, at 1,180,657 to 1,181,691 SMa2093 SMa2095: SMa2095 - hypothetical protein, at 1,181,688 to 1,182,566 SMa2095 SMa2097: SMa2097 - oxidoreductase, at 1,182,563 to 1,183,813 SMa2097 Position (kb) 1181 1182 1183Strain fitness (log2 ratio) -3 -2 -1 0 1at 1180.818 kb on + strand, within SMa2093at 1180.819 kb on - strand, within SMa2093at 1180.904 kb on + strand, within SMa2093at 1180.911 kb on - strand, within SMa2093at 1180.911 kb on - strand, within SMa2093at 1180.940 kb on + strand, within SMa2093at 1180.941 kb on - strand, within SMa2093at 1181.454 kb on + strand, within SMa2093at 1181.454 kb on + strand, within SMa2093at 1182.034 kb on - strand, within SMa2095at 1182.154 kb on + strand, within SMa2095at 1182.155 kb on - strand, within SMa2095at 1182.204 kb on + strand, within SMa2095at 1182.428 kb on - strand, within SMa2095at 1182.520 kb on + strandat 1182.520 kb on + strandat 1182.570 kb on + strandat 1182.571 kb on - strandat 1182.689 kb on + strand, within SMa2097at 1182.690 kb on - strand, within SMa2097at 1182.690 kb on - strand, within SMa2097at 1182.690 kb on - strand, within SMa2097at 1182.874 kb on + strand, within SMa2097at 1182.874 kb on + strand, within SMa2097at 1182.875 kb on - strand, within SMa2097at 1182.875 kb on - strand, within SMa2097at 1182.880 kb on + strand, within SMa2097at 1182.881 kb on - strand, within SMa2097at 1182.881 kb on - strand, within SMa2097at 1182.881 kb on - strand, within SMa2097at 1182.883 kb on - strand, within SMa2097at 1183.340 kb on + strand, within SMa2097at 1183.340 kb on + strand, within SMa2097at 1183.340 kb on + strand, within SMa2097at 1183.340 kb on + strand, within SMa2097at 1183.341 kb on - strand, within SMa2097at 1183.341 kb on - strand, within SMa2097at 1183.361 kb on + strand, within SMa2097at 1183.441 kb on + strand, within SMa2097at 1183.441 kb on + strand, within SMa2097

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose (C)
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1,180,818 + SMa2093 0.16 -0.2
1,180,819 - SMa2093 0.16 +0.3
1,180,904 + SMa2093 0.24 -0.3
1,180,911 - SMa2093 0.25 -0.2
1,180,911 - SMa2093 0.25 +0.1
1,180,940 + SMa2093 0.27 -2.9
1,180,941 - SMa2093 0.27 +0.5
1,181,454 + SMa2093 0.77 -0.2
1,181,454 + SMa2093 0.77 -0.9
1,182,034 - SMa2095 0.39 +0.9
1,182,154 + SMa2095 0.53 -0.1
1,182,155 - SMa2095 0.53 +0.5
1,182,204 + SMa2095 0.59 -0.4
1,182,428 - SMa2095 0.84 +0.1
1,182,520 + +0.1
1,182,520 + -0.4
1,182,570 + -0.5
1,182,571 - -0.2
1,182,689 + SMa2097 0.10 -0.6
1,182,690 - SMa2097 0.10 +0.5
1,182,690 - SMa2097 0.10 +0.7
1,182,690 - SMa2097 0.10 +0.8
1,182,874 + SMa2097 0.25 -1.2
1,182,874 + SMa2097 0.25 +0.1
1,182,875 - SMa2097 0.25 -0.1
1,182,875 - SMa2097 0.25 -0.5
1,182,880 + SMa2097 0.25 +0.4
1,182,881 - SMa2097 0.25 -0.8
1,182,881 - SMa2097 0.25 +0.6
1,182,881 - SMa2097 0.25 -0.1
1,182,883 - SMa2097 0.26 +0.1
1,183,340 + SMa2097 0.62 -0.1
1,183,340 + SMa2097 0.62 -0.1
1,183,340 + SMa2097 0.62 -0.0
1,183,340 + SMa2097 0.62 +0.9
1,183,341 - SMa2097 0.62 -0.1
1,183,341 - SMa2097 0.62 -0.1
1,183,361 + SMa2097 0.64 +0.1
1,183,441 + SMa2097 0.70 +0.3
1,183,441 + SMa2097 0.70 -0.6

Or see this region's nucleotide sequence