Experiment: Beta-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1041 and SMa1043 are separated by 19 nucleotides SMa1043 and SMa1045 are separated by 92 nucleotides SMa1045 and SMa1046 overlap by 4 nucleotides SMa1046 and SMa1050 are separated by 490 nucleotides
SMa1041: SMa1041 - copper oxidase, at 573,346 to 573,858
SMa1041
SMa1043: SMa1043 - hypothetical protein, at 573,878 to 574,162
SMa1043
SMa1045: SMa1045 - hypothetical protein, at 574,255 to 574,542
SMa1045
SMa1046: SMa1046 - adenylate cyclase, at 574,539 to 575,606
SMa1046
SMa1050: SMa1050 - hypothetical protein, at 576,097 to 576,642
SMa1050
Position (kb) 574
575
576 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 574.141 kb on + strand at 574.141 kb on + strand at 574.142 kb on - strand at 574.160 kb on + strand at 574.160 kb on + strand at 574.352 kb on + strand, within SMa1045 at 574.356 kb on - strand, within SMa1045 at 574.356 kb on - strand, within SMa1045 at 574.405 kb on + strand, within SMa1045 at 574.406 kb on - strand, within SMa1045 at 574.444 kb on + strand, within SMa1045 at 574.484 kb on + strand, within SMa1045 at 574.788 kb on + strand at 574.789 kb on - strand, within SMa1046 at 575.177 kb on - strand, within SMa1046 at 575.244 kb on + strand, within SMa1046 at 575.467 kb on + strand, within SMa1046 at 575.468 kb on - strand, within SMa1046 at 575.468 kb on - strand, within SMa1046 at 575.468 kb on - strand, within SMa1046 at 575.513 kb on + strand at 575.513 kb on + strand at 575.516 kb on + strand at 575.517 kb on - strand at 575.517 kb on - strand at 575.604 kb on + strand at 575.605 kb on - strand at 575.679 kb on + strand at 575.679 kb on + strand at 575.775 kb on - strand at 575.807 kb on - strand at 576.027 kb on + strand at 576.028 kb on - strand at 576.188 kb on + strand, within SMa1050 at 576.207 kb on + strand, within SMa1050 at 576.243 kb on - strand, within SMa1050 at 576.265 kb on + strand, within SMa1050 at 576.265 kb on + strand, within SMa1050 at 576.266 kb on - strand, within SMa1050 at 576.266 kb on - strand, within SMa1050 at 576.335 kb on - strand, within SMa1050 at 576.398 kb on - strand, within SMa1050 at 576.537 kb on - strand, within SMa1050
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose (C) remove 574,141 + +0.3 574,141 + -0.2 574,142 - -0.8 574,160 + -1.1 574,160 + -1.2 574,352 + SMa1045 0.34 +1.2 574,356 - SMa1045 0.35 +0.7 574,356 - SMa1045 0.35 +0.2 574,405 + SMa1045 0.52 -0.8 574,406 - SMa1045 0.52 -0.4 574,444 + SMa1045 0.66 +0.3 574,484 + SMa1045 0.80 +0.5 574,788 + -0.1 574,789 - SMa1046 0.23 +0.8 575,177 - SMa1046 0.60 +0.7 575,244 + SMa1046 0.66 +0.2 575,467 + SMa1046 0.87 +0.6 575,468 - SMa1046 0.87 +0.1 575,468 - SMa1046 0.87 +0.3 575,468 - SMa1046 0.87 +0.7 575,513 + +0.3 575,513 + -0.1 575,516 + -3.1 575,517 - -0.4 575,517 - -0.1 575,604 + -0.2 575,605 - -0.4 575,679 + +0.2 575,679 + -0.4 575,775 - +0.5 575,807 - +0.3 576,027 + -0.5 576,028 - +0.1 576,188 + SMa1050 0.17 +0.6 576,207 + SMa1050 0.20 -0.1 576,243 - SMa1050 0.27 -0.4 576,265 + SMa1050 0.31 -0.0 576,265 + SMa1050 0.31 -1.0 576,266 - SMa1050 0.31 +0.7 576,266 - SMa1050 0.31 -0.1 576,335 - SMa1050 0.44 +0.1 576,398 - SMa1050 0.55 -0.4 576,537 - SMa1050 0.81 -0.3
Or see this region's nucleotide sequence