Experiment: Beta-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0753 and SMa0754 are separated by 283 nucleotides
SMa0753: SMa0753 - hypothetical protein, at 406,804 to 407,496
SMa0753
SMa0754: SMa0754 - hypothetical protein, at 407,780 to 408,106
SMa0754
Position (kb) 407
408
409 Strain fitness (log2 ratio) -1
0
1
2 at 406.930 kb on - strand, within SMa0753 at 407.543 kb on + strand at 407.543 kb on + strand at 407.543 kb on + strand at 407.595 kb on + strand at 407.595 kb on + strand at 407.595 kb on + strand at 407.596 kb on - strand at 407.596 kb on - strand at 407.596 kb on - strand at 407.600 kb on - strand at 407.600 kb on - strand at 407.600 kb on - strand at 407.600 kb on - strand at 407.646 kb on + strand at 407.646 kb on + strand at 407.646 kb on + strand at 407.646 kb on + strand at 407.647 kb on - strand at 407.647 kb on - strand at 407.647 kb on - strand at 407.961 kb on - strand, within SMa0754 at 408.035 kb on - strand, within SMa0754 at 408.195 kb on + strand at 408.275 kb on + strand at 408.308 kb on + strand at 408.309 kb on - strand at 408.386 kb on - strand at 408.475 kb on + strand at 408.476 kb on - strand at 408.501 kb on - strand at 408.508 kb on + strand at 408.508 kb on + strand at 408.508 kb on + strand at 408.526 kb on + strand at 408.551 kb on - strand at 408.551 kb on - strand at 408.551 kb on - strand at 408.583 kb on + strand at 408.644 kb on - strand at 408.644 kb on - strand at 408.875 kb on + strand at 408.884 kb on - strand at 408.884 kb on - strand at 408.886 kb on + strand at 408.887 kb on - strand at 408.908 kb on - strand at 408.925 kb on + strand at 408.998 kb on + strand at 408.999 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose (C) remove 406,930 - SMa0753 0.18 -0.2 407,543 + -0.1 407,543 + +0.2 407,543 + -0.2 407,595 + +0.7 407,595 + -0.6 407,595 + -0.8 407,596 - +0.1 407,596 - +0.4 407,596 - +0.0 407,600 - +0.2 407,600 - +0.1 407,600 - +0.1 407,600 - -0.1 407,646 + -0.6 407,646 + -0.0 407,646 + +0.2 407,646 + +0.4 407,647 - +0.5 407,647 - -0.2 407,647 - +0.7 407,961 - SMa0754 0.55 -0.0 408,035 - SMa0754 0.78 +1.2 408,195 + +0.4 408,275 + -0.1 408,308 + +0.2 408,309 - +0.3 408,386 - -0.2 408,475 + -0.2 408,476 - +0.6 408,501 - -0.2 408,508 + -0.4 408,508 + -0.3 408,508 + -0.1 408,526 + -0.1 408,551 - +0.1 408,551 - -0.3 408,551 - +0.1 408,583 + -0.1 408,644 - -0.3 408,644 - +0.3 408,875 + +0.2 408,884 - -0.3 408,884 - +2.0 408,886 + +0.2 408,887 - +0.1 408,908 - +0.2 408,925 + +0.0 408,998 + -0.0 408,999 - +0.6
Or see this region's nucleotide sequence