Experiment: Beta-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0124 and SMa0125 are separated by 47 nucleotides SMa0125 and SMa0126 are separated by 613 nucleotides SMa0126 and SMa0128 are separated by 120 nucleotides SMa0128 and SMa0130 are separated by 85 nucleotides
SMa0124: SMa0124 - molecular chaperone GroEL, at 66,192 to 67,826
SMa0124
SMa0125: SMa0125 - co-chaperonin GroES, at 67,874 to 68,191
SMa0125
SMa0126: SMa0126 - CspA8 Cold shock family protein, at 68,805 to 69,014
SMa0126
SMa0128: SMa0128 - hypothetical protein, at 69,135 to 69,515
SMa0128
SMa0130: SMa0130 - fatty acid desaturase, at 69,601 to 70,668
SMa0130
Position (kb)
68
69
70 Strain fitness (log2 ratio)
-2
-1
0
1 at 67.809 kb on + strand at 67.809 kb on + strand at 67.810 kb on - strand at 67.810 kb on - strand at 67.853 kb on + strand at 67.854 kb on - strand at 67.946 kb on + strand, within SMa0125 at 67.946 kb on + strand, within SMa0125 at 67.947 kb on - strand, within SMa0125 at 67.947 kb on - strand, within SMa0125 at 68.029 kb on + strand, within SMa0125 at 68.214 kb on + strand at 68.214 kb on + strand at 68.215 kb on - strand at 68.216 kb on + strand at 68.217 kb on - strand at 68.239 kb on - strand at 68.262 kb on - strand at 68.307 kb on + strand at 68.352 kb on + strand at 68.409 kb on - strand at 68.484 kb on - strand at 68.498 kb on + strand at 68.584 kb on + strand at 68.585 kb on - strand at 68.585 kb on - strand at 68.678 kb on + strand at 68.679 kb on - strand at 68.694 kb on - strand at 68.781 kb on + strand at 68.781 kb on + strand at 68.782 kb on - strand at 68.804 kb on + strand at 68.822 kb on + strand at 68.822 kb on + strand at 68.823 kb on - strand at 68.823 kb on - strand at 68.972 kb on + strand, within SMa0126 at 68.972 kb on + strand, within SMa0126 at 69.044 kb on + strand at 69.044 kb on + strand at 69.044 kb on + strand at 69.104 kb on + strand at 69.130 kb on - strand at 69.130 kb on - strand at 69.279 kb on - strand, within SMa0128 at 69.513 kb on + strand at 69.513 kb on + strand at 69.513 kb on + strand at 69.597 kb on + strand at 69.598 kb on - strand at 69.600 kb on - strand at 69.616 kb on + strand at 69.616 kb on + strand at 69.617 kb on - strand at 69.617 kb on - strand at 69.617 kb on - strand at 69.676 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose (C) remove 67,809 + -0.4 67,809 + -0.8 67,810 - +0.5 67,810 - +0.6 67,853 + +0.2 67,854 - +0.2 67,946 + SMa0125 0.23 -2.4 67,946 + SMa0125 0.23 +0.1 67,947 - SMa0125 0.23 +0.1 67,947 - SMa0125 0.23 -0.0 68,029 + SMa0125 0.49 +0.1 68,214 + +0.0 68,214 + -0.3 68,215 - +0.2 68,216 + -0.9 68,217 - -0.2 68,239 - +0.1 68,262 - -0.0 68,307 + +1.1 68,352 + -0.0 68,409 - -0.3 68,484 - -0.3 68,498 + +1.7 68,584 + -0.8 68,585 - +0.1 68,585 - -0.8 68,678 + +0.5 68,679 - +0.6 68,694 - +0.1 68,781 + -0.3 68,781 + +0.0 68,782 - -0.2 68,804 + -0.7 68,822 + +0.1 68,822 + -0.0 68,823 - +0.4 68,823 - -1.3 68,972 + SMa0126 0.80 -0.3 68,972 + SMa0126 0.80 +1.3 69,044 + -0.0 69,044 + +0.7 69,044 + -0.3 69,104 + +0.4 69,130 - -0.2 69,130 - +0.6 69,279 - SMa0128 0.38 -0.7 69,513 + +0.1 69,513 + -0.2 69,513 + -0.2 69,597 + -1.5 69,598 - +0.4 69,600 - -1.0 69,616 + -0.1 69,616 + -0.4 69,617 - +0.2 69,617 - -1.1 69,617 - -0.2 69,676 + +0.1
Or see this region's nucleotide sequence