Experiment: Beta-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21600 and SM_b21601 are separated by 281 nucleotides SM_b21601 and SM_b21602 are separated by 126 nucleotides SM_b21602 and SM_b21603 are separated by 3 nucleotides
SM_b21600: SM_b21600 - beta-lactamase, at 1,140,561 to 1,141,751
_b21600
SM_b21601: SM_b21601 - ArsR family transcriptional regulator, at 1,142,033 to 1,142,953
_b21601
SM_b21602: SM_b21602 - sugar uptake ABC transporter permease, at 1,143,080 to 1,143,904
_b21602
SM_b21603: SM_b21603 - sugar uptake ABC transporter permease, at 1,143,908 to 1,144,783
_b21603
Position (kb)
1142
1143 Strain fitness (log2 ratio)
-1
0
1
2 at 1141.072 kb on + strand, within SM_b21600 at 1141.072 kb on + strand, within SM_b21600 at 1141.072 kb on + strand, within SM_b21600 at 1141.072 kb on + strand, within SM_b21600 at 1141.072 kb on + strand, within SM_b21600 at 1141.073 kb on - strand, within SM_b21600 at 1141.073 kb on - strand, within SM_b21600 at 1141.073 kb on - strand, within SM_b21600 at 1141.073 kb on - strand, within SM_b21600 at 1141.078 kb on + strand, within SM_b21600 at 1141.078 kb on + strand, within SM_b21600 at 1141.078 kb on + strand, within SM_b21600 at 1141.079 kb on - strand, within SM_b21600 at 1141.079 kb on - strand, within SM_b21600 at 1141.107 kb on + strand, within SM_b21600 at 1141.140 kb on + strand, within SM_b21600 at 1141.140 kb on + strand, within SM_b21600 at 1141.140 kb on + strand, within SM_b21600 at 1141.140 kb on + strand, within SM_b21600 at 1141.141 kb on - strand, within SM_b21600 at 1141.141 kb on - strand, within SM_b21600 at 1141.191 kb on + strand, within SM_b21600 at 1141.225 kb on + strand, within SM_b21600 at 1141.226 kb on - strand, within SM_b21600 at 1141.250 kb on - strand, within SM_b21600 at 1141.271 kb on - strand, within SM_b21600 at 1141.271 kb on - strand, within SM_b21600 at 1141.274 kb on - strand, within SM_b21600 at 1141.337 kb on + strand, within SM_b21600 at 1141.339 kb on + strand, within SM_b21600 at 1141.339 kb on + strand, within SM_b21600 at 1141.339 kb on + strand, within SM_b21600 at 1141.340 kb on - strand, within SM_b21600 at 1141.399 kb on + strand, within SM_b21600 at 1141.400 kb on - strand, within SM_b21600 at 1141.448 kb on - strand, within SM_b21600 at 1141.547 kb on - strand, within SM_b21600 at 1141.558 kb on + strand, within SM_b21600 at 1141.558 kb on + strand, within SM_b21600 at 1141.558 kb on + strand, within SM_b21600 at 1141.558 kb on + strand, within SM_b21600 at 1141.559 kb on - strand, within SM_b21600 at 1141.559 kb on - strand, within SM_b21600 at 1141.559 kb on - strand, within SM_b21600 at 1141.641 kb on + strand at 1141.835 kb on + strand at 1141.835 kb on + strand at 1141.890 kb on + strand at 1141.891 kb on - strand at 1141.891 kb on - strand at 1141.940 kb on - strand at 1141.989 kb on + strand at 1141.990 kb on - strand at 1142.010 kb on + strand at 1142.041 kb on - strand at 1142.041 kb on - strand at 1142.133 kb on - strand, within SM_b21601 at 1142.215 kb on + strand, within SM_b21601 at 1142.253 kb on + strand, within SM_b21601 at 1142.254 kb on - strand, within SM_b21601 at 1142.289 kb on + strand, within SM_b21601 at 1142.290 kb on - strand, within SM_b21601 at 1142.290 kb on - strand, within SM_b21601 at 1142.332 kb on - strand, within SM_b21601 at 1142.455 kb on + strand, within SM_b21601 at 1142.455 kb on + strand, within SM_b21601 at 1142.456 kb on - strand, within SM_b21601 at 1142.456 kb on - strand, within SM_b21601 at 1142.475 kb on + strand, within SM_b21601 at 1142.476 kb on - strand, within SM_b21601 at 1142.476 kb on - strand, within SM_b21601 at 1142.476 kb on - strand, within SM_b21601 at 1142.697 kb on + strand, within SM_b21601 at 1142.697 kb on + strand, within SM_b21601 at 1142.743 kb on + strand, within SM_b21601 at 1142.744 kb on - strand, within SM_b21601 at 1142.936 kb on - strand at 1142.953 kb on + strand at 1142.954 kb on - strand at 1143.142 kb on - strand at 1143.195 kb on + strand, within SM_b21602 at 1143.306 kb on + strand, within SM_b21602 at 1143.306 kb on + strand, within SM_b21602 at 1143.307 kb on - strand, within SM_b21602 at 1143.307 kb on - strand, within SM_b21602 at 1143.307 kb on - strand, within SM_b21602 at 1143.307 kb on - strand, within SM_b21602 at 1143.307 kb on - strand, within SM_b21602 at 1143.354 kb on + strand, within SM_b21602 at 1143.520 kb on - strand, within SM_b21602 at 1143.520 kb on - strand, within SM_b21602 at 1143.630 kb on + strand, within SM_b21602 at 1143.631 kb on - strand, within SM_b21602 at 1143.699 kb on + strand, within SM_b21602 at 1143.699 kb on + strand, within SM_b21602 at 1143.735 kb on + strand, within SM_b21602 at 1143.785 kb on - strand, within SM_b21602 at 1143.825 kb on + strand at 1143.825 kb on + strand at 1143.825 kb on + strand at 1143.825 kb on + strand at 1143.826 kb on - strand at 1143.862 kb on + strand at 1143.863 kb on - strand at 1143.880 kb on + strand at 1143.880 kb on + strand at 1143.936 kb on + strand at 1143.937 kb on - strand at 1143.937 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose (C) remove 1,141,072 + SM_b21600 0.43 +0.0 1,141,072 + SM_b21600 0.43 -0.2 1,141,072 + SM_b21600 0.43 -0.1 1,141,072 + SM_b21600 0.43 +0.2 1,141,072 + SM_b21600 0.43 -0.3 1,141,073 - SM_b21600 0.43 +0.2 1,141,073 - SM_b21600 0.43 -0.4 1,141,073 - SM_b21600 0.43 -0.2 1,141,073 - SM_b21600 0.43 -0.3 1,141,078 + SM_b21600 0.43 -0.0 1,141,078 + SM_b21600 0.43 +0.0 1,141,078 + SM_b21600 0.43 +0.6 1,141,079 - SM_b21600 0.43 +0.3 1,141,079 - SM_b21600 0.43 -0.3 1,141,107 + SM_b21600 0.46 -0.0 1,141,140 + SM_b21600 0.49 -0.3 1,141,140 + SM_b21600 0.49 -0.5 1,141,140 + SM_b21600 0.49 -0.8 1,141,140 + SM_b21600 0.49 -0.5 1,141,141 - SM_b21600 0.49 +2.2 1,141,141 - SM_b21600 0.49 -1.3 1,141,191 + SM_b21600 0.53 +0.4 1,141,225 + SM_b21600 0.56 +0.5 1,141,226 - SM_b21600 0.56 -0.9 1,141,250 - SM_b21600 0.58 +0.1 1,141,271 - SM_b21600 0.60 +0.2 1,141,271 - SM_b21600 0.60 +1.2 1,141,274 - SM_b21600 0.60 +0.1 1,141,337 + SM_b21600 0.65 +1.0 1,141,339 + SM_b21600 0.65 -0.2 1,141,339 + SM_b21600 0.65 -0.1 1,141,339 + SM_b21600 0.65 +1.0 1,141,340 - SM_b21600 0.65 -0.7 1,141,399 + SM_b21600 0.70 +0.3 1,141,400 - SM_b21600 0.70 -0.7 1,141,448 - SM_b21600 0.74 -0.8 1,141,547 - SM_b21600 0.83 -0.8 1,141,558 + SM_b21600 0.84 +1.5 1,141,558 + SM_b21600 0.84 +0.3 1,141,558 + SM_b21600 0.84 +0.5 1,141,558 + SM_b21600 0.84 -0.5 1,141,559 - SM_b21600 0.84 -0.2 1,141,559 - SM_b21600 0.84 -0.4 1,141,559 - SM_b21600 0.84 -0.4 1,141,641 + -0.2 1,141,835 + +0.4 1,141,835 + -0.7 1,141,890 + -1.2 1,141,891 - +0.5 1,141,891 - +0.2 1,141,940 - -0.3 1,141,989 + -0.3 1,141,990 - -0.1 1,142,010 + -0.6 1,142,041 - +0.1 1,142,041 - +0.2 1,142,133 - SM_b21601 0.11 -0.2 1,142,215 + SM_b21601 0.20 -0.8 1,142,253 + SM_b21601 0.24 -0.4 1,142,254 - SM_b21601 0.24 -0.9 1,142,289 + SM_b21601 0.28 -0.5 1,142,290 - SM_b21601 0.28 -0.0 1,142,290 - SM_b21601 0.28 -0.1 1,142,332 - SM_b21601 0.32 -0.3 1,142,455 + SM_b21601 0.46 -0.3 1,142,455 + SM_b21601 0.46 -0.2 1,142,456 - SM_b21601 0.46 -0.1 1,142,456 - SM_b21601 0.46 -0.3 1,142,475 + SM_b21601 0.48 +0.5 1,142,476 - SM_b21601 0.48 +0.1 1,142,476 - SM_b21601 0.48 -0.3 1,142,476 - SM_b21601 0.48 -0.1 1,142,697 + SM_b21601 0.72 -0.0 1,142,697 + SM_b21601 0.72 +0.2 1,142,743 + SM_b21601 0.77 -0.7 1,142,744 - SM_b21601 0.77 -0.3 1,142,936 - +0.6 1,142,953 + -0.5 1,142,954 - -0.4 1,143,142 - +0.0 1,143,195 + SM_b21602 0.14 +0.2 1,143,306 + SM_b21602 0.27 +0.1 1,143,306 + SM_b21602 0.27 -0.1 1,143,307 - SM_b21602 0.28 +0.6 1,143,307 - SM_b21602 0.28 -0.5 1,143,307 - SM_b21602 0.28 -0.1 1,143,307 - SM_b21602 0.28 +0.2 1,143,307 - SM_b21602 0.28 -0.8 1,143,354 + SM_b21602 0.33 +0.0 1,143,520 - SM_b21602 0.53 -0.3 1,143,520 - SM_b21602 0.53 -1.1 1,143,630 + SM_b21602 0.67 -0.7 1,143,631 - SM_b21602 0.67 +0.0 1,143,699 + SM_b21602 0.75 -0.3 1,143,699 + SM_b21602 0.75 +0.0 1,143,735 + SM_b21602 0.79 -0.1 1,143,785 - SM_b21602 0.85 -0.0 1,143,825 + +0.8 1,143,825 + -0.3 1,143,825 + +0.3 1,143,825 + +1.2 1,143,826 - +0.3 1,143,862 + +0.1 1,143,863 - +0.0 1,143,880 + -0.8 1,143,880 + -0.5 1,143,936 + +0.8 1,143,937 - +0.2 1,143,937 - +0.8
Or see this region's nucleotide sequence