Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21601

Experiment: Beta-Lactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21600 and SM_b21601 are separated by 281 nucleotidesSM_b21601 and SM_b21602 are separated by 126 nucleotidesSM_b21602 and SM_b21603 are separated by 3 nucleotides SM_b21600: SM_b21600 - beta-lactamase, at 1,140,561 to 1,141,751 _b21600 SM_b21601: SM_b21601 - ArsR family transcriptional regulator, at 1,142,033 to 1,142,953 _b21601 SM_b21602: SM_b21602 - sugar uptake ABC transporter permease, at 1,143,080 to 1,143,904 _b21602 SM_b21603: SM_b21603 - sugar uptake ABC transporter permease, at 1,143,908 to 1,144,783 _b21603 Position (kb) 1142 1143Strain fitness (log2 ratio) -1 0 1 2at 1141.072 kb on + strand, within SM_b21600at 1141.072 kb on + strand, within SM_b21600at 1141.072 kb on + strand, within SM_b21600at 1141.072 kb on + strand, within SM_b21600at 1141.072 kb on + strand, within SM_b21600at 1141.073 kb on - strand, within SM_b21600at 1141.073 kb on - strand, within SM_b21600at 1141.073 kb on - strand, within SM_b21600at 1141.073 kb on - strand, within SM_b21600at 1141.078 kb on + strand, within SM_b21600at 1141.078 kb on + strand, within SM_b21600at 1141.078 kb on + strand, within SM_b21600at 1141.079 kb on - strand, within SM_b21600at 1141.079 kb on - strand, within SM_b21600at 1141.107 kb on + strand, within SM_b21600at 1141.140 kb on + strand, within SM_b21600at 1141.140 kb on + strand, within SM_b21600at 1141.140 kb on + strand, within SM_b21600at 1141.140 kb on + strand, within SM_b21600at 1141.141 kb on - strand, within SM_b21600at 1141.141 kb on - strand, within SM_b21600at 1141.191 kb on + strand, within SM_b21600at 1141.225 kb on + strand, within SM_b21600at 1141.226 kb on - strand, within SM_b21600at 1141.250 kb on - strand, within SM_b21600at 1141.271 kb on - strand, within SM_b21600at 1141.271 kb on - strand, within SM_b21600at 1141.274 kb on - strand, within SM_b21600at 1141.337 kb on + strand, within SM_b21600at 1141.339 kb on + strand, within SM_b21600at 1141.339 kb on + strand, within SM_b21600at 1141.339 kb on + strand, within SM_b21600at 1141.340 kb on - strand, within SM_b21600at 1141.399 kb on + strand, within SM_b21600at 1141.400 kb on - strand, within SM_b21600at 1141.448 kb on - strand, within SM_b21600at 1141.547 kb on - strand, within SM_b21600at 1141.558 kb on + strand, within SM_b21600at 1141.558 kb on + strand, within SM_b21600at 1141.558 kb on + strand, within SM_b21600at 1141.558 kb on + strand, within SM_b21600at 1141.559 kb on - strand, within SM_b21600at 1141.559 kb on - strand, within SM_b21600at 1141.559 kb on - strand, within SM_b21600at 1141.641 kb on + strandat 1141.835 kb on + strandat 1141.835 kb on + strandat 1141.890 kb on + strandat 1141.891 kb on - strandat 1141.891 kb on - strandat 1141.940 kb on - strandat 1141.989 kb on + strandat 1141.990 kb on - strandat 1142.010 kb on + strandat 1142.041 kb on - strandat 1142.041 kb on - strandat 1142.133 kb on - strand, within SM_b21601at 1142.215 kb on + strand, within SM_b21601at 1142.253 kb on + strand, within SM_b21601at 1142.254 kb on - strand, within SM_b21601at 1142.289 kb on + strand, within SM_b21601at 1142.290 kb on - strand, within SM_b21601at 1142.290 kb on - strand, within SM_b21601at 1142.332 kb on - strand, within SM_b21601at 1142.455 kb on + strand, within SM_b21601at 1142.455 kb on + strand, within SM_b21601at 1142.456 kb on - strand, within SM_b21601at 1142.456 kb on - strand, within SM_b21601at 1142.475 kb on + strand, within SM_b21601at 1142.476 kb on - strand, within SM_b21601at 1142.476 kb on - strand, within SM_b21601at 1142.476 kb on - strand, within SM_b21601at 1142.697 kb on + strand, within SM_b21601at 1142.697 kb on + strand, within SM_b21601at 1142.743 kb on + strand, within SM_b21601at 1142.744 kb on - strand, within SM_b21601at 1142.936 kb on - strandat 1142.953 kb on + strandat 1142.954 kb on - strandat 1143.142 kb on - strandat 1143.195 kb on + strand, within SM_b21602at 1143.306 kb on + strand, within SM_b21602at 1143.306 kb on + strand, within SM_b21602at 1143.307 kb on - strand, within SM_b21602at 1143.307 kb on - strand, within SM_b21602at 1143.307 kb on - strand, within SM_b21602at 1143.307 kb on - strand, within SM_b21602at 1143.307 kb on - strand, within SM_b21602at 1143.354 kb on + strand, within SM_b21602at 1143.520 kb on - strand, within SM_b21602at 1143.520 kb on - strand, within SM_b21602at 1143.630 kb on + strand, within SM_b21602at 1143.631 kb on - strand, within SM_b21602at 1143.699 kb on + strand, within SM_b21602at 1143.699 kb on + strand, within SM_b21602at 1143.735 kb on + strand, within SM_b21602at 1143.785 kb on - strand, within SM_b21602at 1143.825 kb on + strandat 1143.825 kb on + strandat 1143.825 kb on + strandat 1143.825 kb on + strandat 1143.826 kb on - strandat 1143.862 kb on + strandat 1143.863 kb on - strandat 1143.880 kb on + strandat 1143.880 kb on + strandat 1143.936 kb on + strandat 1143.937 kb on - strandat 1143.937 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose (C)
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1,141,072 + SM_b21600 0.43 +0.0
1,141,072 + SM_b21600 0.43 -0.2
1,141,072 + SM_b21600 0.43 -0.1
1,141,072 + SM_b21600 0.43 +0.2
1,141,072 + SM_b21600 0.43 -0.3
1,141,073 - SM_b21600 0.43 +0.2
1,141,073 - SM_b21600 0.43 -0.4
1,141,073 - SM_b21600 0.43 -0.2
1,141,073 - SM_b21600 0.43 -0.3
1,141,078 + SM_b21600 0.43 -0.0
1,141,078 + SM_b21600 0.43 +0.0
1,141,078 + SM_b21600 0.43 +0.6
1,141,079 - SM_b21600 0.43 +0.3
1,141,079 - SM_b21600 0.43 -0.3
1,141,107 + SM_b21600 0.46 -0.0
1,141,140 + SM_b21600 0.49 -0.3
1,141,140 + SM_b21600 0.49 -0.5
1,141,140 + SM_b21600 0.49 -0.8
1,141,140 + SM_b21600 0.49 -0.5
1,141,141 - SM_b21600 0.49 +2.2
1,141,141 - SM_b21600 0.49 -1.3
1,141,191 + SM_b21600 0.53 +0.4
1,141,225 + SM_b21600 0.56 +0.5
1,141,226 - SM_b21600 0.56 -0.9
1,141,250 - SM_b21600 0.58 +0.1
1,141,271 - SM_b21600 0.60 +0.2
1,141,271 - SM_b21600 0.60 +1.2
1,141,274 - SM_b21600 0.60 +0.1
1,141,337 + SM_b21600 0.65 +1.0
1,141,339 + SM_b21600 0.65 -0.2
1,141,339 + SM_b21600 0.65 -0.1
1,141,339 + SM_b21600 0.65 +1.0
1,141,340 - SM_b21600 0.65 -0.7
1,141,399 + SM_b21600 0.70 +0.3
1,141,400 - SM_b21600 0.70 -0.7
1,141,448 - SM_b21600 0.74 -0.8
1,141,547 - SM_b21600 0.83 -0.8
1,141,558 + SM_b21600 0.84 +1.5
1,141,558 + SM_b21600 0.84 +0.3
1,141,558 + SM_b21600 0.84 +0.5
1,141,558 + SM_b21600 0.84 -0.5
1,141,559 - SM_b21600 0.84 -0.2
1,141,559 - SM_b21600 0.84 -0.4
1,141,559 - SM_b21600 0.84 -0.4
1,141,641 + -0.2
1,141,835 + +0.4
1,141,835 + -0.7
1,141,890 + -1.2
1,141,891 - +0.5
1,141,891 - +0.2
1,141,940 - -0.3
1,141,989 + -0.3
1,141,990 - -0.1
1,142,010 + -0.6
1,142,041 - +0.1
1,142,041 - +0.2
1,142,133 - SM_b21601 0.11 -0.2
1,142,215 + SM_b21601 0.20 -0.8
1,142,253 + SM_b21601 0.24 -0.4
1,142,254 - SM_b21601 0.24 -0.9
1,142,289 + SM_b21601 0.28 -0.5
1,142,290 - SM_b21601 0.28 -0.0
1,142,290 - SM_b21601 0.28 -0.1
1,142,332 - SM_b21601 0.32 -0.3
1,142,455 + SM_b21601 0.46 -0.3
1,142,455 + SM_b21601 0.46 -0.2
1,142,456 - SM_b21601 0.46 -0.1
1,142,456 - SM_b21601 0.46 -0.3
1,142,475 + SM_b21601 0.48 +0.5
1,142,476 - SM_b21601 0.48 +0.1
1,142,476 - SM_b21601 0.48 -0.3
1,142,476 - SM_b21601 0.48 -0.1
1,142,697 + SM_b21601 0.72 -0.0
1,142,697 + SM_b21601 0.72 +0.2
1,142,743 + SM_b21601 0.77 -0.7
1,142,744 - SM_b21601 0.77 -0.3
1,142,936 - +0.6
1,142,953 + -0.5
1,142,954 - -0.4
1,143,142 - +0.0
1,143,195 + SM_b21602 0.14 +0.2
1,143,306 + SM_b21602 0.27 +0.1
1,143,306 + SM_b21602 0.27 -0.1
1,143,307 - SM_b21602 0.28 +0.6
1,143,307 - SM_b21602 0.28 -0.5
1,143,307 - SM_b21602 0.28 -0.1
1,143,307 - SM_b21602 0.28 +0.2
1,143,307 - SM_b21602 0.28 -0.8
1,143,354 + SM_b21602 0.33 +0.0
1,143,520 - SM_b21602 0.53 -0.3
1,143,520 - SM_b21602 0.53 -1.1
1,143,630 + SM_b21602 0.67 -0.7
1,143,631 - SM_b21602 0.67 +0.0
1,143,699 + SM_b21602 0.75 -0.3
1,143,699 + SM_b21602 0.75 +0.0
1,143,735 + SM_b21602 0.79 -0.1
1,143,785 - SM_b21602 0.85 -0.0
1,143,825 + +0.8
1,143,825 + -0.3
1,143,825 + +0.3
1,143,825 + +1.2
1,143,826 - +0.3
1,143,862 + +0.1
1,143,863 - +0.0
1,143,880 + -0.8
1,143,880 + -0.5
1,143,936 + +0.8
1,143,937 - +0.2
1,143,937 - +0.8

Or see this region's nucleotide sequence