Experiment: Beta-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20472 and SM_b20473 are separated by 314 nucleotides SM_b20473 and SM_b20474 are separated by 556 nucleotides SM_b20474 and SM_b20475 overlap by 14 nucleotides
SM_b20472: SM_b20472 - nodulation protein, at 484,580 to 486,412
_b20472
SM_b20473: SM_b20473 - hypothetical protein, at 486,727 to 487,224
_b20473
SM_b20474: SM_b20474 - hypothetical protein, at 487,781 to 488,002
_b20474
SM_b20475: SM_b20475 - hypothetical protein, at 487,989 to 488,483
_b20475
Position (kb) 486
487
488 Strain fitness (log2 ratio) -1
0
1 at 485.748 kb on - strand, within SM_b20472 at 486.012 kb on - strand, within SM_b20472 at 486.012 kb on - strand, within SM_b20472 at 486.013 kb on + strand, within SM_b20472 at 486.013 kb on + strand, within SM_b20472 at 486.013 kb on + strand, within SM_b20472 at 486.014 kb on - strand, within SM_b20472 at 486.014 kb on - strand, within SM_b20472 at 486.014 kb on - strand, within SM_b20472 at 486.014 kb on - strand, within SM_b20472 at 486.014 kb on - strand, within SM_b20472 at 486.014 kb on - strand, within SM_b20472 at 486.033 kb on + strand, within SM_b20472 at 486.033 kb on + strand, within SM_b20472 at 486.034 kb on - strand, within SM_b20472 at 486.087 kb on + strand, within SM_b20472 at 486.087 kb on + strand, within SM_b20472 at 486.088 kb on - strand, within SM_b20472 at 486.141 kb on - strand, within SM_b20472 at 486.199 kb on - strand, within SM_b20472 at 486.199 kb on - strand, within SM_b20472 at 486.199 kb on - strand, within SM_b20472 at 486.231 kb on + strand at 486.273 kb on + strand at 486.273 kb on + strand at 486.274 kb on - strand at 486.386 kb on + strand at 486.386 kb on + strand at 486.427 kb on - strand at 486.442 kb on - strand at 486.442 kb on - strand at 486.705 kb on - strand at 486.865 kb on + strand, within SM_b20473 at 486.925 kb on + strand, within SM_b20473 at 486.926 kb on - strand, within SM_b20473 at 487.032 kb on - strand, within SM_b20473 at 487.032 kb on - strand, within SM_b20473 at 487.032 kb on - strand, within SM_b20473 at 487.032 kb on - strand, within SM_b20473 at 487.104 kb on + strand, within SM_b20473 at 487.104 kb on + strand, within SM_b20473 at 487.105 kb on - strand, within SM_b20473 at 487.181 kb on + strand at 487.181 kb on + strand at 487.261 kb on + strand at 487.262 kb on - strand at 487.262 kb on - strand at 487.262 kb on - strand at 487.262 kb on - strand at 487.268 kb on - strand at 487.270 kb on + strand at 487.270 kb on + strand at 487.271 kb on - strand at 487.271 kb on - strand at 487.271 kb on - strand at 487.350 kb on + strand at 487.351 kb on - strand at 487.361 kb on + strand at 487.362 kb on - strand at 487.376 kb on - strand at 487.387 kb on + strand at 487.388 kb on - strand at 487.388 kb on - strand at 487.388 kb on - strand at 487.388 kb on - strand at 487.388 kb on - strand at 487.389 kb on + strand at 487.389 kb on + strand at 487.390 kb on - strand at 487.390 kb on - strand at 487.391 kb on + strand at 487.392 kb on - strand at 487.392 kb on - strand at 487.635 kb on + strand at 487.653 kb on + strand at 487.654 kb on - strand at 487.654 kb on - strand at 487.774 kb on + strand at 487.775 kb on - strand at 487.870 kb on + strand, within SM_b20474 at 487.944 kb on + strand, within SM_b20474 at 488.040 kb on + strand, within SM_b20475 at 488.040 kb on + strand, within SM_b20475 at 488.041 kb on - strand, within SM_b20475 at 488.119 kb on - strand, within SM_b20475 at 488.156 kb on + strand, within SM_b20475 at 488.216 kb on - strand, within SM_b20475
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose (C) remove 485,748 - SM_b20472 0.64 +0.2 486,012 - SM_b20472 0.78 +0.5 486,012 - SM_b20472 0.78 -0.3 486,013 + SM_b20472 0.78 +0.1 486,013 + SM_b20472 0.78 +0.3 486,013 + SM_b20472 0.78 -0.1 486,014 - SM_b20472 0.78 +0.3 486,014 - SM_b20472 0.78 +0.5 486,014 - SM_b20472 0.78 -0.1 486,014 - SM_b20472 0.78 +0.1 486,014 - SM_b20472 0.78 +0.9 486,014 - SM_b20472 0.78 -0.3 486,033 + SM_b20472 0.79 +0.3 486,033 + SM_b20472 0.79 +0.3 486,034 - SM_b20472 0.79 -0.1 486,087 + SM_b20472 0.82 -0.5 486,087 + SM_b20472 0.82 -0.3 486,088 - SM_b20472 0.82 +0.7 486,141 - SM_b20472 0.85 +0.1 486,199 - SM_b20472 0.88 -0.0 486,199 - SM_b20472 0.88 +0.2 486,199 - SM_b20472 0.88 -0.5 486,231 + +0.5 486,273 + -0.1 486,273 + +0.1 486,274 - +0.3 486,386 + +0.2 486,386 + +0.4 486,427 - -0.1 486,442 - +0.6 486,442 - +0.3 486,705 - -0.4 486,865 + SM_b20473 0.28 -0.3 486,925 + SM_b20473 0.40 +0.3 486,926 - SM_b20473 0.40 -0.4 487,032 - SM_b20473 0.61 -0.6 487,032 - SM_b20473 0.61 +0.4 487,032 - SM_b20473 0.61 -1.2 487,032 - SM_b20473 0.61 -0.4 487,104 + SM_b20473 0.76 -0.2 487,104 + SM_b20473 0.76 -0.8 487,105 - SM_b20473 0.76 -1.0 487,181 + -0.0 487,181 + -0.5 487,261 + -0.2 487,262 - +0.1 487,262 - +0.3 487,262 - +0.2 487,262 - +0.3 487,268 - +0.0 487,270 + +1.3 487,270 + -0.8 487,271 - -0.6 487,271 - -0.0 487,271 - +0.5 487,350 + +0.2 487,351 - +0.3 487,361 + +0.8 487,362 - +0.6 487,376 - -0.1 487,387 + +0.4 487,388 - +1.1 487,388 - +0.2 487,388 - -0.1 487,388 - +0.3 487,388 - -0.2 487,389 + +0.1 487,389 + +0.8 487,390 - -0.7 487,390 - -0.7 487,391 + -1.2 487,392 - -1.2 487,392 - +0.3 487,635 + +0.1 487,653 + +0.6 487,654 - -0.1 487,654 - -0.3 487,774 + +0.9 487,775 - +0.5 487,870 + SM_b20474 0.40 -0.2 487,944 + SM_b20474 0.73 +0.1 488,040 + SM_b20475 0.10 +0.3 488,040 + SM_b20475 0.10 -0.1 488,041 - SM_b20475 0.11 -0.2 488,119 - SM_b20475 0.26 -0.2 488,156 + SM_b20475 0.34 -0.4 488,216 - SM_b20475 0.46 +0.2
Or see this region's nucleotide sequence