Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS25150 and RR42_RS25155 are separated by 228 nucleotides RR42_RS25155 and RR42_RS25160 are separated by 81 nucleotides
RR42_RS25150: RR42_RS25150 - hypothetical protein, at 982,888 to 984,288
_RS25150
RR42_RS25155: RR42_RS25155 - hypothetical protein, at 984,517 to 985,125
_RS25155
RR42_RS25160: RR42_RS25160 - hypothetical protein, at 985,207 to 985,593
_RS25160
Position (kb) 985
986 Strain fitness (log2 ratio) -1
0
1
2 at 984.501 kb on + strand at 984.502 kb on - strand at 984.502 kb on - strand at 984.569 kb on + strand at 984.922 kb on - strand, within RR42_RS25155 at 984.923 kb on + strand, within RR42_RS25155 at 984.923 kb on + strand, within RR42_RS25155 at 984.923 kb on + strand, within RR42_RS25155 at 984.924 kb on - strand, within RR42_RS25155 at 984.924 kb on - strand, within RR42_RS25155 at 984.924 kb on - strand, within RR42_RS25155 at 984.924 kb on - strand, within RR42_RS25155 at 984.961 kb on + strand, within RR42_RS25155 at 984.961 kb on + strand, within RR42_RS25155 at 984.962 kb on - strand, within RR42_RS25155 at 985.048 kb on + strand, within RR42_RS25155 at 985.216 kb on - strand at 985.216 kb on - strand at 985.452 kb on - strand, within RR42_RS25160 at 985.520 kb on + strand, within RR42_RS25160 at 985.521 kb on - strand, within RR42_RS25160 at 985.521 kb on - strand, within RR42_RS25160 at 985.521 kb on - strand, within RR42_RS25160 at 985.660 kb on + strand at 985.873 kb on + strand at 985.874 kb on - strand at 985.874 kb on - strand at 985.885 kb on - strand at 985.934 kb on + strand at 985.934 kb on + strand at 986.012 kb on + strand at 986.166 kb on + strand at 986.215 kb on - strand at 986.237 kb on + strand at 986.259 kb on - strand at 986.275 kb on - strand at 986.290 kb on + strand at 986.290 kb on + strand at 986.291 kb on - strand at 986.297 kb on + strand at 986.297 kb on + strand at 986.298 kb on - strand at 986.346 kb on + strand at 986.347 kb on - strand at 986.366 kb on + strand at 986.367 kb on - strand at 986.391 kb on - strand at 986.423 kb on + strand at 986.424 kb on - strand at 986.442 kb on - strand at 986.460 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 984,501 + +0.6 984,502 - +0.2 984,502 - -0.2 984,569 + -0.5 984,922 - RR42_RS25155 0.67 +0.1 984,923 + RR42_RS25155 0.67 +0.3 984,923 + RR42_RS25155 0.67 +1.9 984,923 + RR42_RS25155 0.67 +0.2 984,924 - RR42_RS25155 0.67 -0.7 984,924 - RR42_RS25155 0.67 -1.2 984,924 - RR42_RS25155 0.67 +0.4 984,924 - RR42_RS25155 0.67 +0.1 984,961 + RR42_RS25155 0.73 -0.4 984,961 + RR42_RS25155 0.73 -0.6 984,962 - RR42_RS25155 0.73 -0.1 985,048 + RR42_RS25155 0.87 +0.3 985,216 - -0.2 985,216 - +1.1 985,452 - RR42_RS25160 0.63 +0.6 985,520 + RR42_RS25160 0.81 +1.6 985,521 - RR42_RS25160 0.81 +0.6 985,521 - RR42_RS25160 0.81 +1.2 985,521 - RR42_RS25160 0.81 +0.4 985,660 + -0.7 985,873 + -1.3 985,874 - -1.0 985,874 - +0.1 985,885 - -1.4 985,934 + -1.0 985,934 + +0.9 986,012 + +0.2 986,166 + -1.0 986,215 - +2.2 986,237 + +0.2 986,259 - +0.9 986,275 - -0.4 986,290 + -0.3 986,290 + -0.1 986,291 - -0.3 986,297 + +1.9 986,297 + -0.4 986,298 - +0.4 986,346 + -1.7 986,347 - +0.2 986,366 + +0.2 986,367 - -1.7 986,391 - +0.7 986,423 + -0.5 986,424 - -0.4 986,442 - -0.7 986,460 + -0.5
Or see this region's nucleotide sequence