Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24875 and RR42_RS24880 overlap by 8 nucleotides RR42_RS24880 and RR42_RS24885 are separated by 40 nucleotides
RR42_RS24875: RR42_RS24875 - IclR family transcriptional regulator, at 919,526 to 920,332
_RS24875
RR42_RS24880: RR42_RS24880 - hypothetical protein, at 920,325 to 920,600
_RS24880
RR42_RS24885: RR42_RS24885 - IclR family transcriptional regulator, at 920,641 to 921,420
_RS24885
Position (kb) 920
921 Strain fitness (log2 ratio) -2
-1
0
1 at 919.520 kb on + strand at 919.521 kb on - strand at 919.757 kb on + strand, within RR42_RS24875 at 919.758 kb on - strand, within RR42_RS24875 at 919.859 kb on - strand, within RR42_RS24875 at 919.864 kb on + strand, within RR42_RS24875 at 919.868 kb on + strand, within RR42_RS24875 at 919.868 kb on + strand, within RR42_RS24875 at 919.869 kb on - strand, within RR42_RS24875 at 919.869 kb on - strand, within RR42_RS24875 at 919.869 kb on - strand, within RR42_RS24875 at 919.924 kb on - strand, within RR42_RS24875 at 919.936 kb on - strand, within RR42_RS24875 at 920.036 kb on + strand, within RR42_RS24875 at 920.036 kb on + strand, within RR42_RS24875 at 920.137 kb on + strand, within RR42_RS24875 at 920.138 kb on - strand, within RR42_RS24875 at 920.344 kb on + strand at 920.514 kb on - strand, within RR42_RS24880 at 920.532 kb on - strand, within RR42_RS24880 at 920.613 kb on + strand at 920.623 kb on - strand at 920.875 kb on + strand, within RR42_RS24885 at 920.876 kb on - strand, within RR42_RS24885 at 920.967 kb on + strand, within RR42_RS24885 at 920.986 kb on + strand, within RR42_RS24885 at 920.986 kb on + strand, within RR42_RS24885 at 920.986 kb on + strand, within RR42_RS24885 at 920.987 kb on - strand, within RR42_RS24885 at 920.987 kb on - strand, within RR42_RS24885 at 920.987 kb on - strand, within RR42_RS24885 at 921.115 kb on + strand, within RR42_RS24885 at 921.115 kb on + strand, within RR42_RS24885 at 921.116 kb on - strand, within RR42_RS24885 at 921.173 kb on + strand, within RR42_RS24885 at 921.173 kb on + strand, within RR42_RS24885 at 921.173 kb on + strand, within RR42_RS24885 at 921.244 kb on + strand, within RR42_RS24885 at 921.444 kb on - strand at 921.470 kb on - strand at 921.525 kb on + strand at 921.594 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 919,520 + +0.5 919,521 - -0.5 919,757 + RR42_RS24875 0.29 -1.3 919,758 - RR42_RS24875 0.29 +1.5 919,859 - RR42_RS24875 0.41 +0.9 919,864 + RR42_RS24875 0.42 -1.0 919,868 + RR42_RS24875 0.42 -0.1 919,868 + RR42_RS24875 0.42 +0.1 919,869 - RR42_RS24875 0.43 -0.4 919,869 - RR42_RS24875 0.43 +0.5 919,869 - RR42_RS24875 0.43 -1.8 919,924 - RR42_RS24875 0.49 -1.1 919,936 - RR42_RS24875 0.51 -0.0 920,036 + RR42_RS24875 0.63 +0.6 920,036 + RR42_RS24875 0.63 -0.3 920,137 + RR42_RS24875 0.76 -0.3 920,138 - RR42_RS24875 0.76 +0.2 920,344 + -0.6 920,514 - RR42_RS24880 0.68 +0.8 920,532 - RR42_RS24880 0.75 +0.4 920,613 + -0.1 920,623 - -1.2 920,875 + RR42_RS24885 0.30 -0.3 920,876 - RR42_RS24885 0.30 +0.4 920,967 + RR42_RS24885 0.42 -0.2 920,986 + RR42_RS24885 0.44 +0.7 920,986 + RR42_RS24885 0.44 -0.7 920,986 + RR42_RS24885 0.44 +0.3 920,987 - RR42_RS24885 0.44 -1.7 920,987 - RR42_RS24885 0.44 -0.3 920,987 - RR42_RS24885 0.44 +0.5 921,115 + RR42_RS24885 0.61 +0.0 921,115 + RR42_RS24885 0.61 -0.6 921,116 - RR42_RS24885 0.61 +1.2 921,173 + RR42_RS24885 0.68 +1.2 921,173 + RR42_RS24885 0.68 -0.1 921,173 + RR42_RS24885 0.68 -0.9 921,244 + RR42_RS24885 0.77 +0.9 921,444 - +1.0 921,470 - -1.9 921,525 + -0.5 921,594 + +0.9
Or see this region's nucleotide sequence