Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23975 and RR42_RS23980 are separated by 130 nucleotides RR42_RS23980 and RR42_RS23985 are separated by 647 nucleotides
RR42_RS23975: RR42_RS23975 - hypothetical protein, at 704,939 to 705,865
_RS23975
RR42_RS23980: RR42_RS23980 - hypothetical protein, at 705,996 to 706,577
_RS23980
RR42_RS23985: RR42_RS23985 - hypothetical protein, at 707,225 to 707,740
_RS23985
Position (kb) 705
706
707 Strain fitness (log2 ratio) -2
-1
0
1 at 705.249 kb on - strand, within RR42_RS23975 at 705.266 kb on - strand, within RR42_RS23975 at 705.290 kb on + strand, within RR42_RS23975 at 705.290 kb on + strand, within RR42_RS23975 at 705.290 kb on + strand, within RR42_RS23975 at 705.294 kb on + strand, within RR42_RS23975 at 705.299 kb on - strand, within RR42_RS23975 at 705.343 kb on - strand, within RR42_RS23975 at 705.343 kb on - strand, within RR42_RS23975 at 705.486 kb on + strand, within RR42_RS23975 at 705.583 kb on - strand, within RR42_RS23975 at 705.583 kb on - strand, within RR42_RS23975 at 705.596 kb on - strand, within RR42_RS23975 at 705.804 kb on + strand at 705.804 kb on + strand at 705.827 kb on + strand at 705.827 kb on + strand at 705.912 kb on - strand at 705.962 kb on + strand at 705.963 kb on - strand at 706.192 kb on + strand, within RR42_RS23980 at 706.263 kb on + strand, within RR42_RS23980 at 706.264 kb on - strand, within RR42_RS23980 at 706.264 kb on - strand, within RR42_RS23980 at 706.264 kb on - strand, within RR42_RS23980 at 706.386 kb on + strand, within RR42_RS23980 at 706.386 kb on + strand, within RR42_RS23980 at 706.387 kb on - strand, within RR42_RS23980 at 706.387 kb on - strand, within RR42_RS23980 at 706.517 kb on - strand, within RR42_RS23980 at 706.528 kb on - strand at 706.577 kb on + strand at 706.577 kb on + strand at 706.578 kb on - strand at 706.578 kb on - strand at 706.578 kb on - strand at 706.578 kb on - strand at 706.783 kb on - strand at 706.823 kb on + strand at 706.824 kb on - strand at 706.926 kb on + strand at 706.926 kb on + strand at 706.927 kb on - strand at 706.927 kb on - strand at 706.939 kb on - strand at 707.094 kb on + strand at 707.094 kb on + strand at 707.094 kb on + strand at 707.094 kb on + strand at 707.094 kb on + strand at 707.094 kb on + strand at 707.095 kb on - strand at 707.095 kb on - strand at 707.095 kb on - strand at 707.095 kb on - strand at 707.135 kb on + strand at 707.135 kb on + strand at 707.189 kb on + strand at 707.318 kb on + strand, within RR42_RS23985 at 707.318 kb on + strand, within RR42_RS23985 at 707.330 kb on + strand, within RR42_RS23985 at 707.331 kb on - strand, within RR42_RS23985 at 707.480 kb on - strand, within RR42_RS23985
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 705,249 - RR42_RS23975 0.33 +0.4 705,266 - RR42_RS23975 0.35 +0.6 705,290 + RR42_RS23975 0.38 +0.0 705,290 + RR42_RS23975 0.38 -0.5 705,290 + RR42_RS23975 0.38 +1.5 705,294 + RR42_RS23975 0.38 +0.6 705,299 - RR42_RS23975 0.39 +0.1 705,343 - RR42_RS23975 0.44 +0.1 705,343 - RR42_RS23975 0.44 -0.1 705,486 + RR42_RS23975 0.59 -0.2 705,583 - RR42_RS23975 0.69 -0.4 705,583 - RR42_RS23975 0.69 +0.5 705,596 - RR42_RS23975 0.71 +0.0 705,804 + -0.2 705,804 + -0.6 705,827 + -1.0 705,827 + -0.0 705,912 - +0.2 705,962 + -0.1 705,963 - -1.1 706,192 + RR42_RS23980 0.34 -0.4 706,263 + RR42_RS23980 0.46 +0.1 706,264 - RR42_RS23980 0.46 +0.4 706,264 - RR42_RS23980 0.46 +0.5 706,264 - RR42_RS23980 0.46 +1.0 706,386 + RR42_RS23980 0.67 +1.1 706,386 + RR42_RS23980 0.67 +0.2 706,387 - RR42_RS23980 0.67 -0.3 706,387 - RR42_RS23980 0.67 -2.0 706,517 - RR42_RS23980 0.90 -0.4 706,528 - -0.6 706,577 + -0.2 706,577 + -0.1 706,578 - +0.9 706,578 - -0.1 706,578 - +1.3 706,578 - -0.1 706,783 - +0.3 706,823 + -0.0 706,824 - +0.6 706,926 + -0.3 706,926 + +1.2 706,927 - -1.0 706,927 - -1.0 706,939 - -0.8 707,094 + +1.7 707,094 + -1.3 707,094 + -0.2 707,094 + -0.2 707,094 + +0.1 707,094 + +1.0 707,095 - -0.5 707,095 - +1.4 707,095 - -0.9 707,095 - +1.1 707,135 + +0.4 707,135 + +0.2 707,189 + +0.1 707,318 + RR42_RS23985 0.18 -0.0 707,318 + RR42_RS23985 0.18 +0.2 707,330 + RR42_RS23985 0.20 +1.0 707,331 - RR42_RS23985 0.21 +0.4 707,480 - RR42_RS23985 0.49 -0.2
Or see this region's nucleotide sequence