Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23840 and RR42_RS23845 are separated by 361 nucleotides
RR42_RS23840: RR42_RS23840 - hypothetical protein, at 676,858 to 678,453
_RS23840
RR42_RS23845: RR42_RS23845 - hypothetical protein, at 678,815 to 679,075
_RS23845
Position (kb) 678
679
680 Strain fitness (log2 ratio) -2
-1
0
1
2 at 677.846 kb on - strand, within RR42_RS23840 at 677.846 kb on - strand, within RR42_RS23840 at 677.922 kb on - strand, within RR42_RS23840 at 677.932 kb on + strand, within RR42_RS23840 at 677.939 kb on + strand, within RR42_RS23840 at 677.939 kb on + strand, within RR42_RS23840 at 678.015 kb on - strand, within RR42_RS23840 at 678.031 kb on - strand, within RR42_RS23840 at 678.038 kb on + strand, within RR42_RS23840 at 678.104 kb on - strand, within RR42_RS23840 at 678.104 kb on - strand, within RR42_RS23840 at 678.153 kb on - strand, within RR42_RS23840 at 678.171 kb on + strand, within RR42_RS23840 at 678.172 kb on - strand, within RR42_RS23840 at 678.245 kb on + strand, within RR42_RS23840 at 678.246 kb on - strand, within RR42_RS23840 at 678.372 kb on + strand at 678.372 kb on + strand at 678.386 kb on + strand at 678.425 kb on + strand at 678.426 kb on - strand at 678.426 kb on - strand at 678.506 kb on + strand at 678.519 kb on - strand at 678.528 kb on - strand at 678.547 kb on - strand at 678.676 kb on + strand at 678.984 kb on + strand, within RR42_RS23845 at 679.044 kb on + strand, within RR42_RS23845 at 679.065 kb on + strand at 679.379 kb on + strand at 679.380 kb on - strand at 679.512 kb on + strand at 679.516 kb on + strand at 679.559 kb on - strand at 679.559 kb on - strand at 679.578 kb on + strand at 679.579 kb on - strand at 679.602 kb on + strand at 679.603 kb on - strand at 679.603 kb on - strand at 679.636 kb on + strand at 679.637 kb on - strand at 679.678 kb on - strand at 679.678 kb on - strand at 679.749 kb on + strand at 679.749 kb on + strand at 679.749 kb on + strand at 679.749 kb on + strand at 679.750 kb on - strand at 679.750 kb on - strand at 679.750 kb on - strand at 679.750 kb on - strand at 679.751 kb on + strand at 679.751 kb on + strand at 679.751 kb on + strand at 679.752 kb on - strand at 679.752 kb on - strand at 679.752 kb on - strand at 679.752 kb on - strand at 679.752 kb on - strand at 679.781 kb on + strand at 679.781 kb on + strand at 679.781 kb on + strand at 679.782 kb on - strand at 679.808 kb on + strand at 679.809 kb on - strand at 679.826 kb on + strand at 679.826 kb on + strand at 679.826 kb on + strand at 679.827 kb on - strand at 679.841 kb on - strand at 679.870 kb on + strand at 679.870 kb on + strand at 679.871 kb on - strand at 679.892 kb on - strand at 679.914 kb on + strand at 679.914 kb on + strand at 679.914 kb on + strand at 679.915 kb on - strand at 679.915 kb on - strand at 679.915 kb on - strand at 679.953 kb on - strand at 679.970 kb on + strand at 679.970 kb on + strand at 679.971 kb on - strand at 679.971 kb on - strand at 679.971 kb on - strand at 679.971 kb on - strand at 679.971 kb on - strand at 679.971 kb on - strand at 679.971 kb on - strand at 679.971 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 677,846 - RR42_RS23840 0.62 +1.4 677,846 - RR42_RS23840 0.62 +1.3 677,922 - RR42_RS23840 0.67 +0.1 677,932 + RR42_RS23840 0.67 -0.5 677,939 + RR42_RS23840 0.68 +0.1 677,939 + RR42_RS23840 0.68 -0.0 678,015 - RR42_RS23840 0.72 +0.7 678,031 - RR42_RS23840 0.73 +0.4 678,038 + RR42_RS23840 0.74 -0.0 678,104 - RR42_RS23840 0.78 -1.6 678,104 - RR42_RS23840 0.78 -0.1 678,153 - RR42_RS23840 0.81 -0.1 678,171 + RR42_RS23840 0.82 -0.3 678,172 - RR42_RS23840 0.82 -1.2 678,245 + RR42_RS23840 0.87 +1.6 678,246 - RR42_RS23840 0.87 +0.2 678,372 + +0.3 678,372 + +0.2 678,386 + -0.9 678,425 + -0.5 678,426 - +1.0 678,426 - +0.4 678,506 + +0.4 678,519 - +0.4 678,528 - +1.4 678,547 - +0.6 678,676 + -0.0 678,984 + RR42_RS23845 0.65 -0.3 679,044 + RR42_RS23845 0.88 +1.2 679,065 + -1.3 679,379 + +1.0 679,380 - +0.3 679,512 + +0.6 679,516 + -1.1 679,559 - -0.1 679,559 - +0.1 679,578 + -0.2 679,579 - +1.0 679,602 + -0.1 679,603 - -0.2 679,603 - +0.2 679,636 + +0.2 679,637 - +0.2 679,678 - -0.9 679,678 - -0.2 679,749 + +0.4 679,749 + +0.6 679,749 + +2.0 679,749 + +0.9 679,750 - +0.8 679,750 - +0.6 679,750 - -0.6 679,750 - +0.7 679,751 + -0.9 679,751 + +0.6 679,751 + +1.0 679,752 - +0.7 679,752 - +0.3 679,752 - +0.3 679,752 - -0.0 679,752 - +0.6 679,781 + +1.0 679,781 + -0.1 679,781 + -0.7 679,782 - -1.4 679,808 + -0.2 679,809 - +0.1 679,826 + -0.2 679,826 + +0.8 679,826 + -2.0 679,827 - +0.3 679,841 - +0.3 679,870 + -0.0 679,870 + -2.1 679,871 - +0.2 679,892 - +0.7 679,914 + -1.0 679,914 + +0.7 679,914 + -0.0 679,915 - +0.2 679,915 - -0.4 679,915 - -1.1 679,953 - -0.2 679,970 + +0.1 679,970 + -0.6 679,971 - +1.2 679,971 - +0.8 679,971 - +1.7 679,971 - -0.1 679,971 - +0.4 679,971 - -0.9 679,971 - -0.0 679,971 - +0.7
Or see this region's nucleotide sequence