Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23330 and RR42_RS23335 overlap by 9 nucleotides RR42_RS23335 and RR42_RS23340 are separated by 491 nucleotides RR42_RS23340 and RR42_RS23345 are separated by 104 nucleotides
RR42_RS23330: RR42_RS23330 - class A beta-lactamase, at 565,293 to 566,180
_RS23330
RR42_RS23335: RR42_RS23335 - hypothetical protein, at 566,172 to 566,552
_RS23335
RR42_RS23340: RR42_RS23340 - RNA ligase, at 567,044 to 568,270
_RS23340
RR42_RS23345: RR42_RS23345 - hypothetical protein, at 568,375 to 569,220
_RS23345
Position (kb) 567
568
569 Strain fitness (log2 ratio) -2
-1
0
1
2 at 566.174 kb on - strand at 566.178 kb on + strand at 566.179 kb on - strand at 566.179 kb on - strand at 566.179 kb on - strand at 566.179 kb on - strand at 566.179 kb on - strand at 566.224 kb on - strand, within RR42_RS23335 at 566.274 kb on - strand, within RR42_RS23335 at 566.347 kb on + strand, within RR42_RS23335 at 566.347 kb on + strand, within RR42_RS23335 at 566.347 kb on + strand, within RR42_RS23335 at 566.347 kb on + strand, within RR42_RS23335 at 566.348 kb on - strand, within RR42_RS23335 at 566.348 kb on - strand, within RR42_RS23335 at 566.849 kb on + strand at 566.850 kb on - strand at 566.850 kb on - strand at 566.919 kb on - strand at 566.921 kb on + strand at 566.921 kb on + strand at 566.921 kb on + strand at 566.921 kb on + strand at 566.921 kb on + strand at 566.922 kb on - strand at 566.922 kb on - strand at 566.922 kb on - strand at 566.922 kb on - strand at 566.945 kb on + strand at 566.945 kb on + strand at 566.945 kb on + strand at 566.946 kb on - strand at 566.981 kb on + strand at 566.982 kb on - strand at 566.982 kb on - strand at 566.982 kb on - strand at 566.982 kb on - strand at 567.011 kb on + strand at 567.060 kb on - strand at 567.067 kb on - strand at 567.067 kb on - strand at 567.067 kb on - strand at 567.067 kb on - strand at 567.202 kb on - strand, within RR42_RS23340 at 567.202 kb on - strand, within RR42_RS23340 at 567.497 kb on + strand, within RR42_RS23340 at 567.498 kb on - strand, within RR42_RS23340 at 567.652 kb on + strand, within RR42_RS23340 at 567.750 kb on - strand, within RR42_RS23340 at 567.886 kb on + strand, within RR42_RS23340 at 567.886 kb on + strand, within RR42_RS23340 at 567.887 kb on - strand, within RR42_RS23340 at 567.887 kb on - strand, within RR42_RS23340 at 567.887 kb on - strand, within RR42_RS23340 at 567.890 kb on + strand, within RR42_RS23340 at 567.890 kb on + strand, within RR42_RS23340 at 567.890 kb on + strand, within RR42_RS23340 at 568.005 kb on - strand, within RR42_RS23340 at 568.005 kb on - strand, within RR42_RS23340 at 568.182 kb on - strand at 568.486 kb on + strand, within RR42_RS23345 at 568.667 kb on + strand, within RR42_RS23345 at 568.667 kb on + strand, within RR42_RS23345 at 568.667 kb on + strand, within RR42_RS23345 at 568.667 kb on + strand, within RR42_RS23345 at 568.668 kb on - strand, within RR42_RS23345 at 568.668 kb on - strand, within RR42_RS23345 at 568.668 kb on - strand, within RR42_RS23345 at 568.862 kb on - strand, within RR42_RS23345 at 569.202 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 566,174 - +0.2 566,178 + +2.0 566,179 - -0.7 566,179 - +0.6 566,179 - +0.2 566,179 - +0.1 566,179 - +0.7 566,224 - RR42_RS23335 0.14 -0.0 566,274 - RR42_RS23335 0.27 +0.6 566,347 + RR42_RS23335 0.46 +0.0 566,347 + RR42_RS23335 0.46 -1.5 566,347 + RR42_RS23335 0.46 +0.1 566,347 + RR42_RS23335 0.46 +0.9 566,348 - RR42_RS23335 0.46 +0.3 566,348 - RR42_RS23335 0.46 +0.5 566,849 + +0.2 566,850 - +0.4 566,850 - -0.5 566,919 - -0.3 566,921 + +0.0 566,921 + -0.7 566,921 + -0.5 566,921 + -2.3 566,921 + +0.2 566,922 - +0.2 566,922 - -0.1 566,922 - +0.7 566,922 - +1.5 566,945 + -0.5 566,945 + +0.3 566,945 + +0.8 566,946 - -0.0 566,981 + +0.2 566,982 - +0.0 566,982 - -0.5 566,982 - +0.1 566,982 - +0.8 567,011 + +0.3 567,060 - -0.7 567,067 - +0.5 567,067 - +0.9 567,067 - -0.3 567,067 - +0.0 567,202 - RR42_RS23340 0.13 -0.4 567,202 - RR42_RS23340 0.13 +0.4 567,497 + RR42_RS23340 0.37 -1.4 567,498 - RR42_RS23340 0.37 -0.2 567,652 + RR42_RS23340 0.50 +0.6 567,750 - RR42_RS23340 0.58 -0.7 567,886 + RR42_RS23340 0.69 +0.9 567,886 + RR42_RS23340 0.69 -1.3 567,887 - RR42_RS23340 0.69 +0.1 567,887 - RR42_RS23340 0.69 -0.2 567,887 - RR42_RS23340 0.69 +0.9 567,890 + RR42_RS23340 0.69 -1.8 567,890 + RR42_RS23340 0.69 -0.2 567,890 + RR42_RS23340 0.69 +0.0 568,005 - RR42_RS23340 0.78 -0.5 568,005 - RR42_RS23340 0.78 +0.0 568,182 - -1.8 568,486 + RR42_RS23345 0.13 -1.0 568,667 + RR42_RS23345 0.35 +0.1 568,667 + RR42_RS23345 0.35 +0.0 568,667 + RR42_RS23345 0.35 +1.0 568,667 + RR42_RS23345 0.35 -0.5 568,668 - RR42_RS23345 0.35 +1.0 568,668 - RR42_RS23345 0.35 -1.2 568,668 - RR42_RS23345 0.35 +0.2 568,862 - RR42_RS23345 0.58 -0.7 569,202 - +0.8
Or see this region's nucleotide sequence