Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22635 and RR42_RS22640 are separated by 94 nucleotides RR42_RS22640 and RR42_RS22645 are separated by 344 nucleotides
RR42_RS22635: RR42_RS22635 - membrane protein, at 412,007 to 413,080
_RS22635
RR42_RS22640: RR42_RS22640 - CAAX amino protease, at 413,175 to 413,963
_RS22640
RR42_RS22645: RR42_RS22645 - GntR family transcriptional regulator, at 414,308 to 415,360
_RS22645
Position (kb) 413
414 Strain fitness (log2 ratio) -1
0
1
2 at 412.341 kb on - strand, within RR42_RS22635 at 412.552 kb on + strand, within RR42_RS22635 at 412.552 kb on + strand, within RR42_RS22635 at 412.553 kb on - strand, within RR42_RS22635 at 412.562 kb on + strand, within RR42_RS22635 at 412.943 kb on - strand, within RR42_RS22635 at 412.994 kb on + strand at 412.994 kb on + strand at 412.995 kb on - strand at 413.078 kb on + strand at 413.079 kb on - strand at 413.079 kb on - strand at 413.392 kb on + strand, within RR42_RS22640 at 413.392 kb on + strand, within RR42_RS22640 at 413.393 kb on - strand, within RR42_RS22640 at 413.440 kb on + strand, within RR42_RS22640 at 413.441 kb on - strand, within RR42_RS22640 at 413.441 kb on - strand, within RR42_RS22640 at 413.480 kb on - strand, within RR42_RS22640 at 413.780 kb on - strand, within RR42_RS22640 at 413.780 kb on - strand, within RR42_RS22640 at 413.824 kb on + strand, within RR42_RS22640 at 413.908 kb on - strand at 414.010 kb on + strand at 414.010 kb on + strand at 414.033 kb on - strand at 414.074 kb on + strand at 414.172 kb on + strand at 414.203 kb on - strand at 414.223 kb on - strand at 414.381 kb on + strand at 414.381 kb on + strand at 414.381 kb on + strand at 414.381 kb on + strand at 414.382 kb on - strand at 414.476 kb on + strand, within RR42_RS22645 at 414.476 kb on + strand, within RR42_RS22645 at 414.782 kb on - strand, within RR42_RS22645 at 414.782 kb on - strand, within RR42_RS22645 at 414.782 kb on - strand, within RR42_RS22645 at 414.869 kb on + strand, within RR42_RS22645
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 412,341 - RR42_RS22635 0.31 -0.1 412,552 + RR42_RS22635 0.51 -0.4 412,552 + RR42_RS22635 0.51 -1.3 412,553 - RR42_RS22635 0.51 -0.3 412,562 + RR42_RS22635 0.52 +0.3 412,943 - RR42_RS22635 0.87 -0.1 412,994 + +0.2 412,994 + +2.7 412,995 - +0.9 413,078 + +0.2 413,079 - +0.1 413,079 - +0.9 413,392 + RR42_RS22640 0.28 +1.6 413,392 + RR42_RS22640 0.28 -0.0 413,393 - RR42_RS22640 0.28 +0.7 413,440 + RR42_RS22640 0.34 +1.0 413,441 - RR42_RS22640 0.34 -0.4 413,441 - RR42_RS22640 0.34 +1.5 413,480 - RR42_RS22640 0.39 +0.4 413,780 - RR42_RS22640 0.77 +0.5 413,780 - RR42_RS22640 0.77 +0.8 413,824 + RR42_RS22640 0.82 +0.7 413,908 - +0.2 414,010 + +0.4 414,010 + -1.3 414,033 - +0.2 414,074 + +0.7 414,172 + +0.9 414,203 - -0.9 414,223 - -0.9 414,381 + +0.2 414,381 + -0.2 414,381 + -0.6 414,381 + +0.1 414,382 - +1.0 414,476 + RR42_RS22645 0.16 +0.9 414,476 + RR42_RS22645 0.16 +0.1 414,782 - RR42_RS22645 0.45 +0.8 414,782 - RR42_RS22645 0.45 +0.7 414,782 - RR42_RS22645 0.45 -0.7 414,869 + RR42_RS22645 0.53 -0.3
Or see this region's nucleotide sequence