Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22015 and RR42_RS22020 are separated by 15 nucleotides RR42_RS22020 and RR42_RS22025 are separated by 256 nucleotides RR42_RS22025 and RR42_RS22030 are separated by 164 nucleotides RR42_RS22030 and RR42_RS22035 overlap by 4 nucleotides
RR42_RS22015: RR42_RS22015 - histidine kinase, at 271,259 to 273,655
_RS22015
RR42_RS22020: RR42_RS22020 - hypothetical protein, at 273,671 to 273,856
_RS22020
RR42_RS22025: RR42_RS22025 - AraC family transcriptional regulator, at 274,113 to 275,090
_RS22025
RR42_RS22030: RR42_RS22030 - hypothetical protein, at 275,255 to 275,689
_RS22030
RR42_RS22035: RR42_RS22035 - ATPase, at 275,686 to 278,376
_RS22035
Position (kb) 274
275
276 Strain fitness (log2 ratio) -2
-1
0
1
2 at 273.244 kb on - strand, within RR42_RS22015 at 273.244 kb on - strand, within RR42_RS22015 at 273.414 kb on - strand, within RR42_RS22015 at 273.846 kb on + strand at 273.847 kb on - strand at 273.902 kb on + strand at 273.916 kb on - strand at 273.936 kb on - strand at 274.017 kb on + strand at 274.018 kb on - strand at 274.018 kb on - strand at 274.162 kb on + strand at 274.275 kb on - strand, within RR42_RS22025 at 274.275 kb on - strand, within RR42_RS22025 at 274.279 kb on - strand, within RR42_RS22025 at 274.654 kb on + strand, within RR42_RS22025 at 274.654 kb on + strand, within RR42_RS22025 at 274.655 kb on - strand, within RR42_RS22025 at 274.655 kb on - strand, within RR42_RS22025 at 274.788 kb on + strand, within RR42_RS22025 at 274.788 kb on + strand, within RR42_RS22025 at 274.875 kb on + strand, within RR42_RS22025 at 275.116 kb on + strand at 275.434 kb on - strand, within RR42_RS22030 at 275.453 kb on + strand, within RR42_RS22030 at 275.454 kb on - strand, within RR42_RS22030 at 275.496 kb on + strand, within RR42_RS22030 at 275.496 kb on + strand, within RR42_RS22030
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 273,244 - RR42_RS22015 0.83 -0.6 273,244 - RR42_RS22015 0.83 -1.0 273,414 - RR42_RS22015 0.90 -2.3 273,846 + +0.2 273,847 - +0.1 273,902 + -0.3 273,916 - -1.5 273,936 - +0.3 274,017 + -0.1 274,018 - +1.7 274,018 - -0.8 274,162 + +0.3 274,275 - RR42_RS22025 0.17 -1.4 274,275 - RR42_RS22025 0.17 +0.8 274,279 - RR42_RS22025 0.17 -0.9 274,654 + RR42_RS22025 0.55 -0.1 274,654 + RR42_RS22025 0.55 -0.4 274,655 - RR42_RS22025 0.55 +0.3 274,655 - RR42_RS22025 0.55 -0.0 274,788 + RR42_RS22025 0.69 -0.4 274,788 + RR42_RS22025 0.69 +0.7 274,875 + RR42_RS22025 0.78 -1.3 275,116 + +0.7 275,434 - RR42_RS22030 0.41 +1.5 275,453 + RR42_RS22030 0.46 +2.7 275,454 - RR42_RS22030 0.46 +0.6 275,496 + RR42_RS22030 0.55 +1.4 275,496 + RR42_RS22030 0.55 +0.6
Or see this region's nucleotide sequence