Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21710

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21705 and RR42_RS21710 are separated by 81 nucleotidesRR42_RS21710 and RR42_RS21715 are separated by 273 nucleotides RR42_RS21705: RR42_RS21705 - alcohol dehydrogenase, at 197,420 to 198,385 _RS21705 RR42_RS21710: RR42_RS21710 - haloacid dehalogenase, at 198,467 to 199,174 _RS21710 RR42_RS21715: RR42_RS21715 - ATPase AAA, at 199,448 to 201,484 _RS21715 Position (kb) 198 199 200Strain fitness (log2 ratio) -2 -1 0 1 2at 197.589 kb on - strand, within RR42_RS21705at 197.738 kb on + strand, within RR42_RS21705at 197.738 kb on + strand, within RR42_RS21705at 197.739 kb on - strand, within RR42_RS21705at 197.741 kb on - strand, within RR42_RS21705at 197.787 kb on - strand, within RR42_RS21705at 197.798 kb on + strand, within RR42_RS21705at 197.799 kb on - strand, within RR42_RS21705at 197.907 kb on - strand, within RR42_RS21705at 197.987 kb on + strand, within RR42_RS21705at 197.987 kb on + strand, within RR42_RS21705at 197.988 kb on - strand, within RR42_RS21705at 197.996 kb on + strand, within RR42_RS21705at 197.996 kb on + strand, within RR42_RS21705at 197.996 kb on + strand, within RR42_RS21705at 197.997 kb on - strand, within RR42_RS21705at 198.065 kb on + strand, within RR42_RS21705at 198.065 kb on + strand, within RR42_RS21705at 198.065 kb on + strand, within RR42_RS21705at 198.066 kb on - strand, within RR42_RS21705at 198.066 kb on - strand, within RR42_RS21705at 198.066 kb on - strand, within RR42_RS21705at 198.066 kb on - strand, within RR42_RS21705at 198.069 kb on - strand, within RR42_RS21705at 198.101 kb on + strand, within RR42_RS21705at 198.101 kb on + strand, within RR42_RS21705at 198.237 kb on + strand, within RR42_RS21705at 198.237 kb on + strand, within RR42_RS21705at 198.407 kb on + strandat 198.407 kb on + strandat 198.523 kb on + strandat 198.523 kb on + strandat 198.879 kb on - strand, within RR42_RS21710at 198.879 kb on - strand, within RR42_RS21710at 198.950 kb on + strand, within RR42_RS21710at 198.950 kb on + strand, within RR42_RS21710at 198.950 kb on + strand, within RR42_RS21710at 198.951 kb on - strand, within RR42_RS21710at 199.058 kb on + strand, within RR42_RS21710at 199.058 kb on + strand, within RR42_RS21710at 199.059 kb on - strand, within RR42_RS21710at 199.059 kb on - strand, within RR42_RS21710at 199.139 kb on - strandat 199.139 kb on - strandat 199.223 kb on + strandat 199.329 kb on + strandat 199.334 kb on + strandat 199.335 kb on - strandat 199.335 kb on - strandat 199.335 kb on - strandat 199.482 kb on + strandat 199.483 kb on - strandat 199.691 kb on + strand, within RR42_RS21715at 199.692 kb on - strand, within RR42_RS21715at 199.692 kb on - strand, within RR42_RS21715at 199.692 kb on - strand, within RR42_RS21715at 199.715 kb on + strand, within RR42_RS21715at 199.715 kb on + strand, within RR42_RS21715at 199.716 kb on - strand, within RR42_RS21715at 199.716 kb on - strand, within RR42_RS21715at 199.758 kb on - strand, within RR42_RS21715at 199.758 kb on - strand, within RR42_RS21715at 199.805 kb on + strand, within RR42_RS21715at 199.918 kb on + strand, within RR42_RS21715at 200.051 kb on + strand, within RR42_RS21715at 200.051 kb on + strand, within RR42_RS21715at 200.052 kb on - strand, within RR42_RS21715at 200.052 kb on - strand, within RR42_RS21715at 200.052 kb on - strand, within RR42_RS21715

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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197,589 - RR42_RS21705 0.17 -0.3
197,738 + RR42_RS21705 0.33 -0.5
197,738 + RR42_RS21705 0.33 -0.3
197,739 - RR42_RS21705 0.33 -1.1
197,741 - RR42_RS21705 0.33 -0.1
197,787 - RR42_RS21705 0.38 -0.9
197,798 + RR42_RS21705 0.39 +2.0
197,799 - RR42_RS21705 0.39 +0.9
197,907 - RR42_RS21705 0.50 +0.5
197,987 + RR42_RS21705 0.59 +0.5
197,987 + RR42_RS21705 0.59 +0.6
197,988 - RR42_RS21705 0.59 +1.2
197,996 + RR42_RS21705 0.60 -1.7
197,996 + RR42_RS21705 0.60 +0.2
197,996 + RR42_RS21705 0.60 -0.3
197,997 - RR42_RS21705 0.60 -0.0
198,065 + RR42_RS21705 0.67 +0.3
198,065 + RR42_RS21705 0.67 -0.7
198,065 + RR42_RS21705 0.67 -0.6
198,066 - RR42_RS21705 0.67 -0.1
198,066 - RR42_RS21705 0.67 +0.4
198,066 - RR42_RS21705 0.67 -0.5
198,066 - RR42_RS21705 0.67 -1.4
198,069 - RR42_RS21705 0.67 -1.8
198,101 + RR42_RS21705 0.70 +2.2
198,101 + RR42_RS21705 0.70 +0.5
198,237 + RR42_RS21705 0.85 -0.5
198,237 + RR42_RS21705 0.85 +1.9
198,407 + -0.2
198,407 + +0.1
198,523 + +0.8
198,523 + -0.4
198,879 - RR42_RS21710 0.58 +0.5
198,879 - RR42_RS21710 0.58 +0.8
198,950 + RR42_RS21710 0.68 +0.3
198,950 + RR42_RS21710 0.68 +1.3
198,950 + RR42_RS21710 0.68 +0.8
198,951 - RR42_RS21710 0.68 +0.5
199,058 + RR42_RS21710 0.83 -0.3
199,058 + RR42_RS21710 0.83 -0.2
199,059 - RR42_RS21710 0.84 +0.1
199,059 - RR42_RS21710 0.84 +0.6
199,139 - -1.4
199,139 - -0.3
199,223 + +1.0
199,329 + +0.3
199,334 + +0.5
199,335 - -0.9
199,335 - +1.2
199,335 - +0.7
199,482 + -0.1
199,483 - -0.7
199,691 + RR42_RS21715 0.12 -0.4
199,692 - RR42_RS21715 0.12 +0.4
199,692 - RR42_RS21715 0.12 -0.3
199,692 - RR42_RS21715 0.12 +0.2
199,715 + RR42_RS21715 0.13 -1.1
199,715 + RR42_RS21715 0.13 +1.0
199,716 - RR42_RS21715 0.13 +0.2
199,716 - RR42_RS21715 0.13 -0.3
199,758 - RR42_RS21715 0.15 +0.3
199,758 - RR42_RS21715 0.15 +0.6
199,805 + RR42_RS21715 0.18 -0.3
199,918 + RR42_RS21715 0.23 -0.7
200,051 + RR42_RS21715 0.30 +0.1
200,051 + RR42_RS21715 0.30 -0.6
200,052 - RR42_RS21715 0.30 +0.6
200,052 - RR42_RS21715 0.30 -0.1
200,052 - RR42_RS21715 0.30 -0.8

Or see this region's nucleotide sequence