Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06540

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS06535 and RR42_RS06540 are separated by 236 nucleotidesRR42_RS06540 and RR42_RS06545 are separated by 210 nucleotidesRR42_RS06545 and RR42_RS06550 are separated by 125 nucleotides RR42_RS06535: RR42_RS06535 - C4-dicarboxylate ABC transporter, at 1,430,420 to 1,431,448 _RS06535 RR42_RS06540: RR42_RS06540 - hypothetical protein, at 1,431,685 to 1,432,389 _RS06540 RR42_RS06545: RR42_RS06545 - thioesterase, at 1,432,600 to 1,432,998 _RS06545 RR42_RS06550: RR42_RS06550 - LuxR family transcriptional regulator, at 1,433,124 to 1,433,669 _RS06550 Position (kb) 1431 1432 1433Strain fitness (log2 ratio) -2 -1 0 1at 1430.777 kb on + strand, within RR42_RS06535at 1430.777 kb on + strand, within RR42_RS06535at 1430.778 kb on - strand, within RR42_RS06535at 1430.778 kb on - strand, within RR42_RS06535at 1430.778 kb on - strand, within RR42_RS06535at 1430.966 kb on + strand, within RR42_RS06535at 1430.967 kb on - strand, within RR42_RS06535at 1430.968 kb on + strand, within RR42_RS06535at 1431.098 kb on + strand, within RR42_RS06535at 1431.098 kb on + strand, within RR42_RS06535at 1431.099 kb on - strand, within RR42_RS06535at 1431.116 kb on + strand, within RR42_RS06535at 1431.116 kb on + strand, within RR42_RS06535at 1431.117 kb on - strand, within RR42_RS06535at 1431.117 kb on - strand, within RR42_RS06535at 1431.134 kb on + strand, within RR42_RS06535at 1431.134 kb on + strand, within RR42_RS06535at 1431.135 kb on - strand, within RR42_RS06535at 1431.135 kb on - strand, within RR42_RS06535at 1431.135 kb on - strand, within RR42_RS06535at 1431.299 kb on - strand, within RR42_RS06535at 1431.378 kb on - strandat 1431.378 kb on - strandat 1431.378 kb on - strandat 1431.542 kb on + strandat 1431.574 kb on - strandat 1431.574 kb on - strandat 1431.574 kb on - strandat 1431.656 kb on + strandat 1431.916 kb on + strand, within RR42_RS06540at 1431.916 kb on + strand, within RR42_RS06540at 1431.916 kb on + strand, within RR42_RS06540at 1431.916 kb on + strand, within RR42_RS06540at 1431.970 kb on + strand, within RR42_RS06540at 1431.970 kb on + strand, within RR42_RS06540at 1431.970 kb on + strand, within RR42_RS06540at 1431.970 kb on + strand, within RR42_RS06540at 1431.971 kb on - strand, within RR42_RS06540at 1431.985 kb on + strand, within RR42_RS06540at 1432.045 kb on + strand, within RR42_RS06540at 1432.387 kb on + strandat 1432.587 kb on + strandat 1432.587 kb on + strandat 1432.588 kb on - strandat 1432.611 kb on - strandat 1432.678 kb on + strand, within RR42_RS06545at 1432.679 kb on - strand, within RR42_RS06545at 1433.145 kb on + strandat 1433.145 kb on + strandat 1433.145 kb on + strandat 1433.163 kb on - strandat 1433.173 kb on + strandat 1433.174 kb on - strandat 1433.174 kb on - strandat 1433.198 kb on - strand, within RR42_RS06550

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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1,430,777 + RR42_RS06535 0.35 -2.0
1,430,777 + RR42_RS06535 0.35 -0.1
1,430,778 - RR42_RS06535 0.35 -0.3
1,430,778 - RR42_RS06535 0.35 +0.2
1,430,778 - RR42_RS06535 0.35 -0.1
1,430,966 + RR42_RS06535 0.53 +1.1
1,430,967 - RR42_RS06535 0.53 +1.4
1,430,968 + RR42_RS06535 0.53 +0.8
1,431,098 + RR42_RS06535 0.66 -0.4
1,431,098 + RR42_RS06535 0.66 +0.1
1,431,099 - RR42_RS06535 0.66 +0.6
1,431,116 + RR42_RS06535 0.68 +0.4
1,431,116 + RR42_RS06535 0.68 -0.9
1,431,117 - RR42_RS06535 0.68 -0.2
1,431,117 - RR42_RS06535 0.68 -0.7
1,431,134 + RR42_RS06535 0.69 +0.0
1,431,134 + RR42_RS06535 0.69 +1.1
1,431,135 - RR42_RS06535 0.69 +0.1
1,431,135 - RR42_RS06535 0.69 -0.6
1,431,135 - RR42_RS06535 0.69 -1.3
1,431,299 - RR42_RS06535 0.85 -0.1
1,431,378 - +0.7
1,431,378 - +0.8
1,431,378 - +0.8
1,431,542 + -0.1
1,431,574 - +0.1
1,431,574 - +0.0
1,431,574 - -0.8
1,431,656 + -0.9
1,431,916 + RR42_RS06540 0.33 -0.6
1,431,916 + RR42_RS06540 0.33 -0.1
1,431,916 + RR42_RS06540 0.33 +0.2
1,431,916 + RR42_RS06540 0.33 +0.6
1,431,970 + RR42_RS06540 0.40 +0.2
1,431,970 + RR42_RS06540 0.40 +0.8
1,431,970 + RR42_RS06540 0.40 +1.4
1,431,970 + RR42_RS06540 0.40 +0.0
1,431,971 - RR42_RS06540 0.41 -0.5
1,431,985 + RR42_RS06540 0.43 +1.5
1,432,045 + RR42_RS06540 0.51 +0.7
1,432,387 + -0.8
1,432,587 + +0.8
1,432,587 + +0.1
1,432,588 - +0.5
1,432,611 - +0.3
1,432,678 + RR42_RS06545 0.20 +0.6
1,432,679 - RR42_RS06545 0.20 -1.3
1,433,145 + -0.1
1,433,145 + +0.8
1,433,145 + +0.5
1,433,163 - +1.4
1,433,173 + -0.2
1,433,174 - -0.5
1,433,174 - -0.3
1,433,198 - RR42_RS06550 0.14 -0.8

Or see this region's nucleotide sequence