Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS05490 and RR42_RS05495 are separated by 128 nucleotides RR42_RS05495 and RR42_RS05500 are separated by 46 nucleotides RR42_RS05500 and RR42_RS05505 are separated by 208 nucleotides RR42_RS05505 and RR42_RS05510 are separated by 164 nucleotides
RR42_RS05490: RR42_RS05490 - NAD(P)H-quinone oxidoreductase, at 1,212,370 to 1,213,374
_RS05490
RR42_RS05495: RR42_RS05495 - triosephosphate isomerase, at 1,213,503 to 1,214,240
_RS05495
RR42_RS05500: RR42_RS05500 - preprotein translocase subunit SecG, at 1,214,287 to 1,214,655
_RS05500
RR42_RS05505: RR42_RS05505 - tRNA-Leu, at 1,214,864 to 1,214,948
_RS05505
RR42_RS05510: RR42_RS05510 - NADH:ubiquinone oxidoreductase subunit A, at 1,215,113 to 1,215,472
_RS05510
Position (kb)
1213
1214
1215 Strain fitness (log2 ratio)
-2
-1
0
1 at 1212.510 kb on + strand, within RR42_RS05490 at 1212.521 kb on - strand, within RR42_RS05490 at 1212.661 kb on + strand, within RR42_RS05490 at 1212.787 kb on + strand, within RR42_RS05490 at 1212.788 kb on - strand, within RR42_RS05490 at 1212.967 kb on + strand, within RR42_RS05490 at 1212.967 kb on + strand, within RR42_RS05490 at 1212.968 kb on - strand, within RR42_RS05490 at 1213.055 kb on - strand, within RR42_RS05490 at 1214.521 kb on + strand, within RR42_RS05500 at 1214.674 kb on + strand at 1214.674 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 1,212,510 + RR42_RS05490 0.14 +0.5 1,212,521 - RR42_RS05490 0.15 -1.1 1,212,661 + RR42_RS05490 0.29 -0.9 1,212,787 + RR42_RS05490 0.41 +1.0 1,212,788 - RR42_RS05490 0.42 -0.1 1,212,967 + RR42_RS05490 0.59 -0.5 1,212,967 + RR42_RS05490 0.59 +0.2 1,212,968 - RR42_RS05490 0.60 +0.4 1,213,055 - RR42_RS05490 0.68 -0.6 1,214,521 + RR42_RS05500 0.63 -2.0 1,214,674 + +1.6 1,214,674 + -0.6
Or see this region's nucleotide sequence