Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05380

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS05370 and RR42_RS05375 are separated by 24 nucleotidesRR42_RS05375 and RR42_RS05380 are separated by 38 nucleotidesRR42_RS05380 and RR42_RS05385 are separated by 148 nucleotidesRR42_RS05385 and RR42_RS05390 overlap by 4 nucleotides RR42_RS05370: RR42_RS05370 - ABC transporter permease, at 1,187,274 to 1,189,817 _RS05370 RR42_RS05375: RR42_RS05375 - hemoglobin-like protein, at 1,189,842 to 1,190,279 _RS05375 RR42_RS05380: RR42_RS05380 - membrane protein, at 1,190,318 to 1,190,935 _RS05380 RR42_RS05385: RR42_RS05385 - LOG family protein, at 1,191,084 to 1,191,668 _RS05385 RR42_RS05390: RR42_RS05390 - TetR family transcriptional regulator, at 1,191,665 to 1,192,363 _RS05390 Position (kb) 1190 1191Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1189.491 kb on + strand, within RR42_RS05370at 1189.491 kb on + strand, within RR42_RS05370at 1189.491 kb on + strand, within RR42_RS05370at 1189.492 kb on - strand, within RR42_RS05370at 1189.492 kb on - strand, within RR42_RS05370at 1189.588 kb on - strandat 1189.841 kb on + strandat 1189.841 kb on + strandat 1189.841 kb on + strandat 1189.841 kb on + strandat 1189.842 kb on - strandat 1189.842 kb on - strandat 1189.912 kb on - strand, within RR42_RS05375at 1189.962 kb on + strand, within RR42_RS05375at 1189.962 kb on + strand, within RR42_RS05375at 1189.963 kb on - strand, within RR42_RS05375at 1189.963 kb on - strand, within RR42_RS05375at 1190.304 kb on + strandat 1190.305 kb on - strandat 1190.305 kb on - strandat 1190.305 kb on - strandat 1190.305 kb on - strandat 1190.374 kb on - strandat 1190.705 kb on + strand, within RR42_RS05380at 1191.253 kb on + strand, within RR42_RS05385at 1191.254 kb on - strand, within RR42_RS05385at 1191.296 kb on - strand, within RR42_RS05385at 1191.557 kb on - strand, within RR42_RS05385at 1191.649 kb on + strandat 1191.649 kb on + strandat 1191.650 kb on - strandat 1191.650 kb on - strandat 1191.778 kb on + strand, within RR42_RS05390at 1191.778 kb on + strand, within RR42_RS05390at 1191.778 kb on + strand, within RR42_RS05390at 1191.778 kb on + strand, within RR42_RS05390at 1191.778 kb on + strand, within RR42_RS05390at 1191.779 kb on - strand, within RR42_RS05390at 1191.779 kb on - strand, within RR42_RS05390at 1191.783 kb on + strand, within RR42_RS05390at 1191.784 kb on - strand, within RR42_RS05390at 1191.784 kb on - strand, within RR42_RS05390at 1191.829 kb on - strand, within RR42_RS05390at 1191.829 kb on - strand, within RR42_RS05390at 1191.867 kb on + strand, within RR42_RS05390at 1191.867 kb on + strand, within RR42_RS05390at 1191.867 kb on + strand, within RR42_RS05390at 1191.867 kb on + strand, within RR42_RS05390at 1191.867 kb on + strand, within RR42_RS05390at 1191.867 kb on + strand, within RR42_RS05390at 1191.868 kb on - strand, within RR42_RS05390at 1191.868 kb on - strand, within RR42_RS05390at 1191.886 kb on + strand, within RR42_RS05390at 1191.886 kb on + strand, within RR42_RS05390at 1191.887 kb on - strand, within RR42_RS05390

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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1,189,491 + RR42_RS05370 0.87 -0.6
1,189,491 + RR42_RS05370 0.87 -1.0
1,189,491 + RR42_RS05370 0.87 +0.4
1,189,492 - RR42_RS05370 0.87 +0.3
1,189,492 - RR42_RS05370 0.87 -0.1
1,189,588 - +0.6
1,189,841 + +0.5
1,189,841 + -3.2
1,189,841 + -0.5
1,189,841 + -0.5
1,189,842 - +0.6
1,189,842 - -1.4
1,189,912 - RR42_RS05375 0.16 +1.3
1,189,962 + RR42_RS05375 0.27 -1.5
1,189,962 + RR42_RS05375 0.27 -1.0
1,189,963 - RR42_RS05375 0.28 -1.0
1,189,963 - RR42_RS05375 0.28 +0.2
1,190,304 + -2.2
1,190,305 - -1.3
1,190,305 - -1.0
1,190,305 - +0.4
1,190,305 - -2.4
1,190,374 - -0.5
1,190,705 + RR42_RS05380 0.63 +0.6
1,191,253 + RR42_RS05385 0.29 +0.3
1,191,254 - RR42_RS05385 0.29 -1.7
1,191,296 - RR42_RS05385 0.36 +0.8
1,191,557 - RR42_RS05385 0.81 -1.5
1,191,649 + +1.3
1,191,649 + -0.7
1,191,650 - -0.4
1,191,650 - +0.5
1,191,778 + RR42_RS05390 0.16 -0.2
1,191,778 + RR42_RS05390 0.16 +1.2
1,191,778 + RR42_RS05390 0.16 +1.1
1,191,778 + RR42_RS05390 0.16 -0.4
1,191,778 + RR42_RS05390 0.16 -0.4
1,191,779 - RR42_RS05390 0.16 +0.3
1,191,779 - RR42_RS05390 0.16 +0.7
1,191,783 + RR42_RS05390 0.17 +0.2
1,191,784 - RR42_RS05390 0.17 -2.1
1,191,784 - RR42_RS05390 0.17 +0.5
1,191,829 - RR42_RS05390 0.23 +0.1
1,191,829 - RR42_RS05390 0.23 +0.2
1,191,867 + RR42_RS05390 0.29 -0.4
1,191,867 + RR42_RS05390 0.29 -1.0
1,191,867 + RR42_RS05390 0.29 +1.3
1,191,867 + RR42_RS05390 0.29 +0.3
1,191,867 + RR42_RS05390 0.29 +0.5
1,191,867 + RR42_RS05390 0.29 +0.2
1,191,868 - RR42_RS05390 0.29 +1.0
1,191,868 - RR42_RS05390 0.29 +1.6
1,191,886 + RR42_RS05390 0.32 -0.3
1,191,886 + RR42_RS05390 0.32 +1.8
1,191,887 - RR42_RS05390 0.32 -2.3

Or see this region's nucleotide sequence