Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04195 and RR42_RS04200 are separated by 67 nucleotides RR42_RS04200 and RR42_RS04205 are separated by 66 nucleotides
RR42_RS04195: RR42_RS04195 - membrane protein, at 928,564 to 929,661
_RS04195
RR42_RS04200: RR42_RS04200 - peptidase M48, at 929,729 to 930,889
_RS04200
RR42_RS04205: RR42_RS04205 - glycine cleavage system regulatory protein, at 930,956 to 931,843
_RS04205
Position (kb) 929
930
931 Strain fitness (log2 ratio) -1
0
1
2 at 928.750 kb on + strand, within RR42_RS04195 at 928.751 kb on - strand, within RR42_RS04195 at 928.751 kb on - strand, within RR42_RS04195 at 928.757 kb on - strand, within RR42_RS04195 at 928.793 kb on - strand, within RR42_RS04195 at 928.873 kb on - strand, within RR42_RS04195 at 928.973 kb on - strand, within RR42_RS04195 at 928.973 kb on - strand, within RR42_RS04195 at 929.017 kb on + strand, within RR42_RS04195 at 929.017 kb on + strand, within RR42_RS04195 at 929.017 kb on + strand, within RR42_RS04195 at 929.017 kb on + strand, within RR42_RS04195 at 929.017 kb on + strand, within RR42_RS04195 at 929.018 kb on - strand, within RR42_RS04195 at 929.062 kb on + strand, within RR42_RS04195 at 929.062 kb on + strand, within RR42_RS04195 at 929.062 kb on + strand, within RR42_RS04195 at 929.062 kb on + strand, within RR42_RS04195 at 929.102 kb on - strand, within RR42_RS04195 at 929.102 kb on - strand, within RR42_RS04195 at 929.167 kb on + strand, within RR42_RS04195 at 929.168 kb on - strand, within RR42_RS04195 at 929.168 kb on - strand, within RR42_RS04195 at 929.168 kb on - strand, within RR42_RS04195 at 929.176 kb on + strand, within RR42_RS04195 at 929.454 kb on + strand, within RR42_RS04195 at 929.455 kb on - strand, within RR42_RS04195 at 929.455 kb on - strand, within RR42_RS04195 at 929.455 kb on - strand, within RR42_RS04195 at 929.538 kb on + strand, within RR42_RS04195 at 929.638 kb on + strand at 929.639 kb on - strand at 929.639 kb on - strand at 929.674 kb on + strand at 929.675 kb on - strand at 929.768 kb on + strand at 930.086 kb on + strand, within RR42_RS04200 at 930.092 kb on + strand, within RR42_RS04200 at 930.092 kb on + strand, within RR42_RS04200 at 930.093 kb on - strand, within RR42_RS04200 at 930.509 kb on + strand, within RR42_RS04200 at 930.590 kb on + strand, within RR42_RS04200 at 930.591 kb on - strand, within RR42_RS04200 at 930.887 kb on + strand at 930.887 kb on + strand at 930.887 kb on + strand at 930.888 kb on - strand at 930.888 kb on - strand at 930.888 kb on - strand at 930.888 kb on - strand at 930.910 kb on + strand at 930.910 kb on + strand at 930.910 kb on + strand at 930.910 kb on + strand at 930.911 kb on - strand at 930.911 kb on - strand at 930.911 kb on - strand at 930.976 kb on + strand at 930.976 kb on + strand at 930.977 kb on - strand at 930.977 kb on - strand at 930.977 kb on - strand at 931.032 kb on + strand at 931.033 kb on - strand at 931.033 kb on - strand at 931.093 kb on - strand, within RR42_RS04205 at 931.093 kb on - strand, within RR42_RS04205 at 931.093 kb on - strand, within RR42_RS04205 at 931.411 kb on - strand, within RR42_RS04205
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 928,750 + RR42_RS04195 0.17 +0.7 928,751 - RR42_RS04195 0.17 -0.8 928,751 - RR42_RS04195 0.17 +0.6 928,757 - RR42_RS04195 0.18 +0.0 928,793 - RR42_RS04195 0.21 -0.3 928,873 - RR42_RS04195 0.28 -0.1 928,973 - RR42_RS04195 0.37 +0.1 928,973 - RR42_RS04195 0.37 -0.7 929,017 + RR42_RS04195 0.41 +0.2 929,017 + RR42_RS04195 0.41 -0.4 929,017 + RR42_RS04195 0.41 -0.4 929,017 + RR42_RS04195 0.41 +0.3 929,017 + RR42_RS04195 0.41 +0.7 929,018 - RR42_RS04195 0.41 +0.3 929,062 + RR42_RS04195 0.45 -0.2 929,062 + RR42_RS04195 0.45 -0.7 929,062 + RR42_RS04195 0.45 +0.2 929,062 + RR42_RS04195 0.45 -1.0 929,102 - RR42_RS04195 0.49 -0.2 929,102 - RR42_RS04195 0.49 +1.1 929,167 + RR42_RS04195 0.55 -0.1 929,168 - RR42_RS04195 0.55 +0.6 929,168 - RR42_RS04195 0.55 -0.4 929,168 - RR42_RS04195 0.55 -0.0 929,176 + RR42_RS04195 0.56 +0.9 929,454 + RR42_RS04195 0.81 +0.7 929,455 - RR42_RS04195 0.81 +0.3 929,455 - RR42_RS04195 0.81 -0.3 929,455 - RR42_RS04195 0.81 +2.0 929,538 + RR42_RS04195 0.89 +0.0 929,638 + -0.6 929,639 - +1.4 929,639 - -0.5 929,674 + -1.2 929,675 - -0.6 929,768 + +0.3 930,086 + RR42_RS04200 0.31 +1.3 930,092 + RR42_RS04200 0.31 +0.6 930,092 + RR42_RS04200 0.31 +0.2 930,093 - RR42_RS04200 0.31 -0.5 930,509 + RR42_RS04200 0.67 -0.1 930,590 + RR42_RS04200 0.74 +0.7 930,591 - RR42_RS04200 0.74 -0.2 930,887 + +0.3 930,887 + -0.0 930,887 + +0.3 930,888 - -0.8 930,888 - +0.0 930,888 - -0.6 930,888 - +0.5 930,910 + -0.8 930,910 + +0.7 930,910 + +0.3 930,910 + -0.6 930,911 - +1.0 930,911 - -0.8 930,911 - +0.5 930,976 + -0.4 930,976 + +0.4 930,977 - -0.6 930,977 - -0.5 930,977 - +0.3 931,032 + +0.3 931,033 - +0.0 931,033 - -0.8 931,093 - RR42_RS04205 0.15 +0.9 931,093 - RR42_RS04205 0.15 +0.2 931,093 - RR42_RS04205 0.15 +1.7 931,411 - RR42_RS04205 0.51 +0.0
Or see this region's nucleotide sequence