Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03905 and RR42_RS03910 are separated by 169 nucleotides RR42_RS03910 and RR42_RS03915 overlap by 4 nucleotides RR42_RS03915 and RR42_RS03920 are separated by 55 nucleotides RR42_RS03920 and RR42_RS03925 are separated by 45 nucleotides
RR42_RS03905: RR42_RS03905 - hypothetical protein, at 860,946 to 861,863
_RS03905
RR42_RS03910: RR42_RS03910 - (2Fe-2S)-binding protein, at 862,033 to 862,506
_RS03910
RR42_RS03915: RR42_RS03915 - hypothetical protein, at 862,503 to 864,788
_RS03915
RR42_RS03920: RR42_RS03920 - rubredoxin, at 864,844 to 865,020
_RS03920
RR42_RS03925: RR42_RS03925 - hypothetical protein, at 865,066 to 866,229
_RS03925
Position (kb) 862
863
864
865 Strain fitness (log2 ratio) -2
-1
0
1
2 at 861.539 kb on + strand, within RR42_RS03905 at 861.556 kb on + strand, within RR42_RS03905 at 861.556 kb on + strand, within RR42_RS03905 at 861.556 kb on + strand, within RR42_RS03905 at 861.556 kb on + strand, within RR42_RS03905 at 861.556 kb on + strand, within RR42_RS03905 at 861.557 kb on - strand, within RR42_RS03905 at 861.590 kb on - strand, within RR42_RS03905 at 861.784 kb on - strand at 861.785 kb on + strand at 861.785 kb on + strand at 861.786 kb on - strand at 861.786 kb on - strand at 861.786 kb on - strand at 861.786 kb on - strand at 861.786 kb on - strand at 861.786 kb on - strand at 861.786 kb on - strand at 861.786 kb on - strand at 861.889 kb on + strand at 862.441 kb on + strand, within RR42_RS03910 at 862.442 kb on - strand, within RR42_RS03910 at 862.442 kb on - strand, within RR42_RS03910 at 862.523 kb on + strand at 862.524 kb on - strand at 862.737 kb on + strand, within RR42_RS03915 at 862.738 kb on - strand, within RR42_RS03915 at 862.814 kb on - strand, within RR42_RS03915 at 862.814 kb on - strand, within RR42_RS03915 at 863.052 kb on + strand, within RR42_RS03915 at 863.613 kb on + strand, within RR42_RS03915 at 863.614 kb on - strand, within RR42_RS03915 at 863.614 kb on - strand, within RR42_RS03915 at 863.626 kb on - strand, within RR42_RS03915 at 863.626 kb on - strand, within RR42_RS03915 at 863.841 kb on + strand, within RR42_RS03915 at 863.841 kb on + strand, within RR42_RS03915 at 863.841 kb on + strand, within RR42_RS03915 at 863.842 kb on - strand, within RR42_RS03915 at 863.842 kb on - strand, within RR42_RS03915 at 863.842 kb on - strand, within RR42_RS03915 at 863.842 kb on - strand, within RR42_RS03915 at 863.910 kb on + strand, within RR42_RS03915 at 863.911 kb on - strand, within RR42_RS03915 at 863.913 kb on + strand, within RR42_RS03915 at 864.085 kb on - strand, within RR42_RS03915 at 864.085 kb on - strand, within RR42_RS03915 at 864.165 kb on + strand, within RR42_RS03915 at 864.373 kb on - strand, within RR42_RS03915 at 864.373 kb on - strand, within RR42_RS03915 at 864.382 kb on - strand, within RR42_RS03915 at 864.390 kb on + strand, within RR42_RS03915 at 864.391 kb on - strand, within RR42_RS03915 at 864.391 kb on - strand, within RR42_RS03915 at 864.519 kb on + strand, within RR42_RS03915 at 864.786 kb on + strand at 864.787 kb on - strand at 864.813 kb on + strand at 864.813 kb on + strand at 864.813 kb on + strand at 864.813 kb on + strand at 864.814 kb on - strand at 864.814 kb on - strand at 864.814 kb on - strand at 864.875 kb on + strand, within RR42_RS03920 at 864.876 kb on - strand, within RR42_RS03920 at 864.876 kb on - strand, within RR42_RS03920 at 865.204 kb on + strand, within RR42_RS03925 at 865.676 kb on + strand, within RR42_RS03925
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 861,539 + RR42_RS03905 0.65 -0.2 861,556 + RR42_RS03905 0.66 +0.4 861,556 + RR42_RS03905 0.66 +1.0 861,556 + RR42_RS03905 0.66 +1.4 861,556 + RR42_RS03905 0.66 -1.3 861,556 + RR42_RS03905 0.66 +0.1 861,557 - RR42_RS03905 0.67 -0.2 861,590 - RR42_RS03905 0.70 +0.0 861,784 - +1.4 861,785 + +0.8 861,785 + +0.8 861,786 - +0.0 861,786 - -0.0 861,786 - +0.6 861,786 - +1.0 861,786 - +0.1 861,786 - +0.1 861,786 - -1.0 861,786 - +0.0 861,889 + -1.2 862,441 + RR42_RS03910 0.86 +0.8 862,442 - RR42_RS03910 0.86 -0.3 862,442 - RR42_RS03910 0.86 +0.6 862,523 + -2.3 862,524 - -0.1 862,737 + RR42_RS03915 0.10 -0.1 862,738 - RR42_RS03915 0.10 -0.4 862,814 - RR42_RS03915 0.14 -0.4 862,814 - RR42_RS03915 0.14 +0.7 863,052 + RR42_RS03915 0.24 -0.3 863,613 + RR42_RS03915 0.49 +2.0 863,614 - RR42_RS03915 0.49 +0.5 863,614 - RR42_RS03915 0.49 -0.7 863,626 - RR42_RS03915 0.49 +0.2 863,626 - RR42_RS03915 0.49 -2.2 863,841 + RR42_RS03915 0.59 +0.2 863,841 + RR42_RS03915 0.59 -0.5 863,841 + RR42_RS03915 0.59 -0.4 863,842 - RR42_RS03915 0.59 +0.8 863,842 - RR42_RS03915 0.59 +1.0 863,842 - RR42_RS03915 0.59 +1.4 863,842 - RR42_RS03915 0.59 -0.2 863,910 + RR42_RS03915 0.62 +0.7 863,911 - RR42_RS03915 0.62 +0.1 863,913 + RR42_RS03915 0.62 -0.5 864,085 - RR42_RS03915 0.69 -0.2 864,085 - RR42_RS03915 0.69 -0.4 864,165 + RR42_RS03915 0.73 -0.1 864,373 - RR42_RS03915 0.82 -0.7 864,373 - RR42_RS03915 0.82 -2.3 864,382 - RR42_RS03915 0.82 -0.3 864,390 + RR42_RS03915 0.83 -0.2 864,391 - RR42_RS03915 0.83 -0.7 864,391 - RR42_RS03915 0.83 +0.5 864,519 + RR42_RS03915 0.88 -1.4 864,786 + -0.3 864,787 - +0.6 864,813 + -0.2 864,813 + +0.6 864,813 + -1.4 864,813 + -1.3 864,814 - +0.1 864,814 - -0.4 864,814 - +0.4 864,875 + RR42_RS03920 0.18 +0.5 864,876 - RR42_RS03920 0.18 +1.1 864,876 - RR42_RS03920 0.18 +0.6 865,204 + RR42_RS03925 0.12 -0.3 865,676 + RR42_RS03925 0.52 -1.2
Or see this region's nucleotide sequence