Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01875 and RR42_RS01880 are separated by 23 nucleotides RR42_RS01880 and RR42_RS01885 are separated by 226 nucleotides RR42_RS01885 and RR42_RS01890 are separated by 34 nucleotides
RR42_RS01875: RR42_RS01875 - cytochrome C oxidase subunit II, at 422,649 to 423,911
_RS01875
RR42_RS01880: RR42_RS01880 - cytochrome oxidase subunit I, at 423,935 to 425,539
_RS01880
RR42_RS01885: RR42_RS01885 - cytochrome C oxidase assembly protein, at 425,766 to 426,380
_RS01885
RR42_RS01890: RR42_RS01890 - membrane protein, at 426,415 to 426,627
_RS01890
Position (kb) 423
424
425
426 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 423.078 kb on + strand, within RR42_RS01875 at 423.177 kb on + strand, within RR42_RS01875 at 423.177 kb on + strand, within RR42_RS01875 at 423.177 kb on + strand, within RR42_RS01875 at 423.178 kb on - strand, within RR42_RS01875 at 423.432 kb on + strand, within RR42_RS01875 at 423.570 kb on - strand, within RR42_RS01875 at 423.648 kb on - strand, within RR42_RS01875 at 423.723 kb on + strand, within RR42_RS01875 at 423.940 kb on + strand at 423.940 kb on + strand at 423.941 kb on - strand at 423.941 kb on - strand at 423.946 kb on + strand at 424.062 kb on - strand at 424.688 kb on + strand, within RR42_RS01880 at 424.727 kb on + strand, within RR42_RS01880 at 424.727 kb on + strand, within RR42_RS01880 at 424.727 kb on + strand, within RR42_RS01880 at 424.728 kb on - strand, within RR42_RS01880 at 424.805 kb on - strand, within RR42_RS01880 at 424.805 kb on - strand, within RR42_RS01880 at 424.818 kb on - strand, within RR42_RS01880 at 424.913 kb on + strand, within RR42_RS01880 at 424.914 kb on - strand, within RR42_RS01880 at 424.914 kb on - strand, within RR42_RS01880 at 425.105 kb on + strand, within RR42_RS01880 at 425.130 kb on - strand, within RR42_RS01880 at 425.130 kb on - strand, within RR42_RS01880 at 425.174 kb on + strand, within RR42_RS01880 at 425.175 kb on - strand, within RR42_RS01880 at 425.175 kb on - strand, within RR42_RS01880 at 425.175 kb on - strand, within RR42_RS01880 at 425.208 kb on - strand, within RR42_RS01880 at 425.208 kb on - strand, within RR42_RS01880 at 425.394 kb on - strand at 425.394 kb on - strand at 425.537 kb on + strand at 425.537 kb on + strand at 425.537 kb on + strand at 425.563 kb on - strand at 425.759 kb on + strand at 425.886 kb on + strand, within RR42_RS01885 at 425.941 kb on - strand, within RR42_RS01885 at 426.139 kb on - strand, within RR42_RS01885 at 426.282 kb on - strand, within RR42_RS01885 at 426.282 kb on - strand, within RR42_RS01885 at 426.291 kb on + strand, within RR42_RS01885 at 426.292 kb on - strand, within RR42_RS01885 at 426.294 kb on - strand, within RR42_RS01885
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 423,078 + RR42_RS01875 0.34 -3.5 423,177 + RR42_RS01875 0.42 -2.6 423,177 + RR42_RS01875 0.42 -1.2 423,177 + RR42_RS01875 0.42 -1.6 423,178 - RR42_RS01875 0.42 -1.8 423,432 + RR42_RS01875 0.62 -0.6 423,570 - RR42_RS01875 0.73 +0.2 423,648 - RR42_RS01875 0.79 +0.4 423,723 + RR42_RS01875 0.85 -0.3 423,940 + -3.1 423,940 + -2.9 423,941 - -2.7 423,941 - -1.4 423,946 + -2.8 424,062 - -1.0 424,688 + RR42_RS01880 0.47 -1.6 424,727 + RR42_RS01880 0.49 -3.3 424,727 + RR42_RS01880 0.49 -0.4 424,727 + RR42_RS01880 0.49 +0.2 424,728 - RR42_RS01880 0.49 +0.6 424,805 - RR42_RS01880 0.54 -1.2 424,805 - RR42_RS01880 0.54 -0.4 424,818 - RR42_RS01880 0.55 -2.9 424,913 + RR42_RS01880 0.61 -2.2 424,914 - RR42_RS01880 0.61 -2.0 424,914 - RR42_RS01880 0.61 -1.2 425,105 + RR42_RS01880 0.73 -0.4 425,130 - RR42_RS01880 0.74 -2.5 425,130 - RR42_RS01880 0.74 -1.6 425,174 + RR42_RS01880 0.77 -0.3 425,175 - RR42_RS01880 0.77 -3.1 425,175 - RR42_RS01880 0.77 -1.8 425,175 - RR42_RS01880 0.77 -0.8 425,208 - RR42_RS01880 0.79 -1.1 425,208 - RR42_RS01880 0.79 -1.8 425,394 - -0.4 425,394 - +0.6 425,537 + +0.3 425,537 + -0.2 425,537 + +0.2 425,563 - -1.6 425,759 + +0.4 425,886 + RR42_RS01885 0.20 -1.2 425,941 - RR42_RS01885 0.28 -2.4 426,139 - RR42_RS01885 0.61 -3.1 426,282 - RR42_RS01885 0.84 -0.7 426,282 - RR42_RS01885 0.84 -2.7 426,291 + RR42_RS01885 0.85 -2.1 426,292 - RR42_RS01885 0.86 -1.7 426,294 - RR42_RS01885 0.86 -1.1
Or see this region's nucleotide sequence