Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_713 and Pf6N2E2_714 are separated by 566 nucleotides Pf6N2E2_714 and Pf6N2E2_715 are separated by 25 nucleotides Pf6N2E2_715 and Pf6N2E2_716 are separated by 73 nucleotides
Pf6N2E2_713 - Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family), at 816,906 to 817,589
_713
Pf6N2E2_714 - NnrS protein involved in response to NO, at 818,156 to 819,346
_714
Pf6N2E2_715 - putative membrane protein, at 819,372 to 819,809
_715
Pf6N2E2_716 - Nitric oxide-dependent regulator DnrN or NorA, at 819,883 to 820,557
_716
Position (kb) 818
819
820 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 817.243 kb on + strand, within Pf6N2E2_713 at 817.243 kb on + strand, within Pf6N2E2_713 at 817.243 kb on + strand, within Pf6N2E2_713 at 817.243 kb on + strand, within Pf6N2E2_713 at 817.243 kb on + strand, within Pf6N2E2_713 at 817.243 kb on + strand, within Pf6N2E2_713 at 817.243 kb on + strand, within Pf6N2E2_713 at 817.244 kb on - strand, within Pf6N2E2_713 at 817.244 kb on - strand, within Pf6N2E2_713 at 817.244 kb on - strand, within Pf6N2E2_713 at 817.244 kb on - strand at 817.244 kb on - strand, within Pf6N2E2_713 at 817.244 kb on - strand, within Pf6N2E2_713 at 817.247 kb on + strand, within Pf6N2E2_713 at 817.264 kb on + strand, within Pf6N2E2_713 at 817.266 kb on + strand, within Pf6N2E2_713 at 817.266 kb on + strand, within Pf6N2E2_713 at 817.267 kb on - strand, within Pf6N2E2_713 at 817.267 kb on - strand, within Pf6N2E2_713 at 817.303 kb on + strand, within Pf6N2E2_713 at 817.304 kb on - strand, within Pf6N2E2_713 at 817.429 kb on + strand, within Pf6N2E2_713 at 817.605 kb on + strand at 817.606 kb on - strand at 817.606 kb on - strand at 817.606 kb on - strand at 817.606 kb on - strand at 817.606 kb on - strand at 817.798 kb on + strand at 817.799 kb on - strand at 817.799 kb on - strand at 817.861 kb on + strand at 817.878 kb on + strand at 817.989 kb on + strand at 817.990 kb on - strand at 817.990 kb on - strand at 817.993 kb on + strand at 818.117 kb on + strand at 818.117 kb on + strand at 818.155 kb on + strand at 818.155 kb on + strand at 818.155 kb on + strand at 818.155 kb on + strand at 818.155 kb on + strand at 818.155 kb on + strand at 818.155 kb on + strand at 818.155 kb on + strand at 818.155 kb on + strand at 818.155 kb on + strand at 818.155 kb on + strand at 818.155 kb on + strand at 818.155 kb on + strand at 818.155 kb on + strand at 818.155 kb on + strand at 818.155 kb on + strand at 818.155 kb on + strand at 818.155 kb on + strand at 818.155 kb on + strand at 818.155 kb on + strand at 818.156 kb on - strand at 818.156 kb on - strand at 818.156 kb on - strand at 818.156 kb on - strand at 818.156 kb on - strand at 818.156 kb on - strand at 818.156 kb on - strand at 818.156 kb on - strand at 818.156 kb on - strand at 818.156 kb on - strand at 818.156 kb on - strand at 818.156 kb on - strand at 818.156 kb on - strand at 818.156 kb on - strand at 818.177 kb on - strand at 818.588 kb on + strand, within Pf6N2E2_714 at 818.604 kb on + strand, within Pf6N2E2_714 at 818.604 kb on + strand, within Pf6N2E2_714 at 818.605 kb on - strand, within Pf6N2E2_714 at 818.640 kb on + strand, within Pf6N2E2_714 at 818.846 kb on + strand, within Pf6N2E2_714 at 818.846 kb on + strand, within Pf6N2E2_714 at 818.846 kb on + strand, within Pf6N2E2_714 at 818.846 kb on + strand, within Pf6N2E2_714 at 818.847 kb on - strand, within Pf6N2E2_714 at 818.990 kb on + strand, within Pf6N2E2_714 at 819.285 kb on + strand at 819.286 kb on - strand at 819.287 kb on + strand at 819.287 kb on + strand at 819.287 kb on + strand at 819.288 kb on - strand at 819.376 kb on - strand at 819.676 kb on - strand, within Pf6N2E2_715 at 819.676 kb on - strand, within Pf6N2E2_715 at 819.676 kb on - strand, within Pf6N2E2_715 at 819.676 kb on - strand, within Pf6N2E2_715 at 819.690 kb on + strand, within Pf6N2E2_715 at 819.690 kb on + strand, within Pf6N2E2_715 at 819.690 kb on + strand, within Pf6N2E2_715 at 819.691 kb on - strand, within Pf6N2E2_715 at 819.795 kb on + strand at 819.795 kb on + strand at 819.795 kb on + strand at 819.796 kb on - strand at 819.864 kb on - strand at 819.978 kb on - strand, within Pf6N2E2_716 at 820.181 kb on + strand, within Pf6N2E2_716 at 820.181 kb on + strand, within Pf6N2E2_716 at 820.181 kb on + strand, within Pf6N2E2_716 at 820.181 kb on + strand, within Pf6N2E2_716 at 820.182 kb on - strand, within Pf6N2E2_716 at 820.182 kb on - strand, within Pf6N2E2_716 at 820.182 kb on - strand, within Pf6N2E2_716 at 820.182 kb on - strand, within Pf6N2E2_716
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 817,243 + Pf6N2E2_713 0.49 +1.7 817,243 + Pf6N2E2_713 0.49 +0.1 817,243 + Pf6N2E2_713 0.49 +1.4 817,243 + Pf6N2E2_713 0.49 +1.2 817,243 + Pf6N2E2_713 0.49 -0.1 817,243 + Pf6N2E2_713 0.49 -0.3 817,243 + Pf6N2E2_713 0.49 -0.8 817,244 - Pf6N2E2_713 0.49 +2.6 817,244 - Pf6N2E2_713 0.49 -1.6 817,244 - Pf6N2E2_713 0.49 +0.5 817,244 - -0.4 817,244 - Pf6N2E2_713 0.49 -0.5 817,244 - Pf6N2E2_713 0.49 -0.3 817,247 + Pf6N2E2_713 0.50 -0.1 817,264 + Pf6N2E2_713 0.52 +0.7 817,266 + Pf6N2E2_713 0.53 -0.5 817,266 + Pf6N2E2_713 0.53 +1.7 817,267 - Pf6N2E2_713 0.53 +0.3 817,267 - Pf6N2E2_713 0.53 -3.1 817,303 + Pf6N2E2_713 0.58 -1.4 817,304 - Pf6N2E2_713 0.58 +1.2 817,429 + Pf6N2E2_713 0.76 +0.3 817,605 + +0.6 817,606 - -1.3 817,606 - -1.9 817,606 - -3.7 817,606 - -3.7 817,606 - -2.5 817,798 + +0.3 817,799 - -3.5 817,799 - -0.0 817,861 + +0.0 817,878 + +0.7 817,989 + +1.6 817,990 - -0.3 817,990 - +0.2 817,993 + +0.4 818,117 + +0.9 818,117 + +0.5 818,155 + +1.5 818,155 + +1.0 818,155 + -0.0 818,155 + +0.5 818,155 + -0.4 818,155 + +0.5 818,155 + -0.9 818,155 + -2.4 818,155 + -1.0 818,155 + -0.2 818,155 + +0.5 818,155 + +1.2 818,155 + +1.0 818,155 + +2.0 818,155 + +1.1 818,155 + -3.2 818,155 + +0.9 818,155 + +1.2 818,155 + -1.8 818,155 + +0.2 818,156 - +0.0 818,156 - +0.7 818,156 - -3.4 818,156 - +1.2 818,156 - -0.7 818,156 - -1.2 818,156 - -0.5 818,156 - +1.0 818,156 - +0.6 818,156 - -0.4 818,156 - -0.3 818,156 - +0.7 818,156 - -0.6 818,156 - -0.4 818,177 - +0.8 818,588 + Pf6N2E2_714 0.36 +1.6 818,604 + Pf6N2E2_714 0.38 -2.0 818,604 + Pf6N2E2_714 0.38 +1.2 818,605 - Pf6N2E2_714 0.38 -2.8 818,640 + Pf6N2E2_714 0.41 +1.0 818,846 + Pf6N2E2_714 0.58 +1.0 818,846 + Pf6N2E2_714 0.58 +1.6 818,846 + Pf6N2E2_714 0.58 +1.5 818,846 + Pf6N2E2_714 0.58 +0.6 818,847 - Pf6N2E2_714 0.58 -1.3 818,990 + Pf6N2E2_714 0.70 +1.6 819,285 + +1.5 819,286 - -0.7 819,287 + -0.5 819,287 + -3.5 819,287 + +0.4 819,288 - -0.6 819,376 - -3.4 819,676 - Pf6N2E2_715 0.69 +1.0 819,676 - Pf6N2E2_715 0.69 +1.0 819,676 - Pf6N2E2_715 0.69 +0.5 819,676 - Pf6N2E2_715 0.69 -0.4 819,690 + Pf6N2E2_715 0.73 -2.4 819,690 + Pf6N2E2_715 0.73 -2.7 819,690 + Pf6N2E2_715 0.73 +1.2 819,691 - Pf6N2E2_715 0.73 +0.1 819,795 + +0.5 819,795 + +0.5 819,795 + +1.9 819,796 - -0.3 819,864 - +0.0 819,978 - Pf6N2E2_716 0.14 -0.6 820,181 + Pf6N2E2_716 0.44 +1.0 820,181 + Pf6N2E2_716 0.44 +0.2 820,181 + Pf6N2E2_716 0.44 -0.5 820,181 + Pf6N2E2_716 0.44 +0.8 820,182 - Pf6N2E2_716 0.44 +1.3 820,182 - Pf6N2E2_716 0.44 +0.7 820,182 - Pf6N2E2_716 0.44 +0.8 820,182 - Pf6N2E2_716 0.44 +0.3
Or see this region's nucleotide sequence