Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_500 and Pf6N2E2_501 are separated by 84 nucleotides Pf6N2E2_501 and Pf6N2E2_502 are separated by 239 nucleotides Pf6N2E2_502 and Pf6N2E2_503 are separated by 185 nucleotides
Pf6N2E2_500 - Beta-ureidopropionase (EC 3.5.1.6), at 569,178 to 570,461
_500
Pf6N2E2_501 - Sensory box transcriptional regulator, LuxR family, at 570,546 to 572,030
_501
Pf6N2E2_502 - hypothetical protein, at 572,270 to 572,515
_502
Pf6N2E2_503 - sensor histidine kinase, at 572,701 to 574,086
_503
Position (kb) 570
571
572
573 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 569.760 kb on + strand, within Pf6N2E2_500 at 569.761 kb on - strand, within Pf6N2E2_500 at 569.909 kb on + strand, within Pf6N2E2_500 at 569.910 kb on - strand, within Pf6N2E2_500 at 570.190 kb on - strand, within Pf6N2E2_500 at 570.476 kb on - strand at 570.497 kb on - strand at 570.526 kb on - strand at 570.526 kb on - strand at 570.526 kb on - strand at 570.526 kb on - strand at 570.726 kb on + strand, within Pf6N2E2_501 at 570.726 kb on + strand, within Pf6N2E2_501 at 570.726 kb on + strand, within Pf6N2E2_501 at 570.727 kb on - strand, within Pf6N2E2_501 at 570.727 kb on - strand, within Pf6N2E2_501 at 570.783 kb on + strand, within Pf6N2E2_501 at 570.784 kb on - strand, within Pf6N2E2_501 at 570.784 kb on - strand, within Pf6N2E2_501 at 571.038 kb on + strand, within Pf6N2E2_501 at 571.038 kb on + strand, within Pf6N2E2_501 at 571.039 kb on - strand, within Pf6N2E2_501 at 571.111 kb on - strand, within Pf6N2E2_501 at 571.647 kb on + strand, within Pf6N2E2_501 at 571.647 kb on + strand, within Pf6N2E2_501 at 571.647 kb on + strand, within Pf6N2E2_501 at 571.648 kb on - strand, within Pf6N2E2_501 at 571.648 kb on - strand, within Pf6N2E2_501 at 571.648 kb on - strand, within Pf6N2E2_501 at 571.908 kb on - strand at 571.929 kb on - strand at 571.935 kb on + strand at 571.996 kb on + strand at 572.177 kb on + strand at 572.178 kb on - strand at 572.185 kb on + strand at 572.186 kb on - strand at 572.186 kb on - strand at 572.205 kb on + strand at 572.205 kb on + strand at 572.205 kb on + strand at 572.206 kb on - strand at 572.364 kb on + strand, within Pf6N2E2_502 at 572.372 kb on + strand, within Pf6N2E2_502 at 572.373 kb on - strand, within Pf6N2E2_502 at 572.373 kb on - strand, within Pf6N2E2_502 at 572.474 kb on + strand, within Pf6N2E2_502 at 572.489 kb on - strand, within Pf6N2E2_502 at 572.561 kb on - strand at 572.561 kb on - strand at 572.561 kb on - strand at 572.637 kb on + strand at 572.703 kb on - strand at 572.761 kb on + strand at 572.761 kb on + strand at 572.761 kb on + strand at 572.855 kb on + strand, within Pf6N2E2_503 at 572.856 kb on - strand, within Pf6N2E2_503 at 573.025 kb on + strand, within Pf6N2E2_503 at 573.025 kb on + strand, within Pf6N2E2_503 at 573.025 kb on + strand, within Pf6N2E2_503 at 573.026 kb on - strand, within Pf6N2E2_503
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 569,760 + Pf6N2E2_500 0.45 -2.0 569,761 - Pf6N2E2_500 0.45 +0.1 569,909 + Pf6N2E2_500 0.57 -0.2 569,910 - Pf6N2E2_500 0.57 +1.5 570,190 - Pf6N2E2_500 0.79 +2.2 570,476 - -0.1 570,497 - -0.4 570,526 - +0.3 570,526 - -0.2 570,526 - -0.7 570,526 - +0.4 570,726 + Pf6N2E2_501 0.12 -1.0 570,726 + Pf6N2E2_501 0.12 +1.7 570,726 + Pf6N2E2_501 0.12 +1.1 570,727 - Pf6N2E2_501 0.12 +0.9 570,727 - Pf6N2E2_501 0.12 +1.3 570,783 + Pf6N2E2_501 0.16 +0.2 570,784 - Pf6N2E2_501 0.16 +0.7 570,784 - Pf6N2E2_501 0.16 +1.6 571,038 + Pf6N2E2_501 0.33 -0.1 571,038 + Pf6N2E2_501 0.33 -0.2 571,039 - Pf6N2E2_501 0.33 +1.2 571,111 - Pf6N2E2_501 0.38 -0.2 571,647 + Pf6N2E2_501 0.74 +0.8 571,647 + Pf6N2E2_501 0.74 -2.2 571,647 + Pf6N2E2_501 0.74 -0.4 571,648 - Pf6N2E2_501 0.74 +1.0 571,648 - Pf6N2E2_501 0.74 -2.8 571,648 - Pf6N2E2_501 0.74 +1.5 571,908 - -2.8 571,929 - -2.2 571,935 + +1.4 571,996 + +0.1 572,177 + +1.0 572,178 - -0.4 572,185 + +0.5 572,186 - -0.2 572,186 - +1.5 572,205 + +1.1 572,205 + -0.4 572,205 + -0.3 572,206 - -0.6 572,364 + Pf6N2E2_502 0.38 +0.9 572,372 + Pf6N2E2_502 0.41 +0.1 572,373 - Pf6N2E2_502 0.42 -1.4 572,373 - Pf6N2E2_502 0.42 -3.4 572,474 + Pf6N2E2_502 0.83 +1.2 572,489 - Pf6N2E2_502 0.89 -0.9 572,561 - -2.2 572,561 - -0.6 572,561 - -0.7 572,637 + +0.9 572,703 - -0.5 572,761 + -0.2 572,761 + -1.3 572,761 + +2.0 572,855 + Pf6N2E2_503 0.11 +0.2 572,856 - Pf6N2E2_503 0.11 +0.0 573,025 + Pf6N2E2_503 0.23 +0.3 573,025 + Pf6N2E2_503 0.23 +1.4 573,025 + Pf6N2E2_503 0.23 +1.4 573,026 - Pf6N2E2_503 0.23 +1.5
Or see this region's nucleotide sequence