Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4932 and Pf6N2E2_4933 are separated by 16 nucleotides Pf6N2E2_4933 and Pf6N2E2_4934 overlap by 4 nucleotides Pf6N2E2_4934 and Pf6N2E2_4935 are separated by 229 nucleotides
Pf6N2E2_4931 - 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7), at 5,683,828 to 5,685,726
_4931
Pf6N2E2_4932 - hypothetical protein, at 5,685,709 to 5,685,825
_4932
Pf6N2E2_4933 - Octaprenyl-diphosphate synthase (EC 2.5.1.-) / Dimethylallyltransferase (EC 2.5.1.1) / Geranyltranstransferase (farnesyldiphosphate synthase) (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29), at 5,685,842 to 5,686,729
_4933
Pf6N2E2_4934 - Exodeoxyribonuclease VII small subunit (EC 3.1.11.6), at 5,686,726 to 5,686,968
_4934
Pf6N2E2_4935 - Fic family protein, at 5,687,198 to 5,688,334
_4935
Position (kb) 5686
5687 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5685.740 kb on - strand, within Pf6N2E2_4932 at 5685.742 kb on - strand, within Pf6N2E2_4932 at 5685.742 kb on - strand, within Pf6N2E2_4932 at 5685.742 kb on - strand, within Pf6N2E2_4932 at 5685.742 kb on - strand, within Pf6N2E2_4932 at 5685.742 kb on - strand, within Pf6N2E2_4932 at 5685.742 kb on - strand, within Pf6N2E2_4932 at 5685.742 kb on - strand, within Pf6N2E2_4932 at 5685.742 kb on - strand, within Pf6N2E2_4932 at 5685.742 kb on - strand, within Pf6N2E2_4932 at 5685.742 kb on - strand, within Pf6N2E2_4932 at 5685.742 kb on - strand, within Pf6N2E2_4932 at 5685.742 kb on - strand, within Pf6N2E2_4932 at 5685.742 kb on - strand, within Pf6N2E2_4932 at 5685.742 kb on - strand, within Pf6N2E2_4932 at 5685.746 kb on - strand, within Pf6N2E2_4932 at 5685.746 kb on - strand, within Pf6N2E2_4932 at 5685.746 kb on - strand, within Pf6N2E2_4932 at 5685.748 kb on - strand, within Pf6N2E2_4932 at 5685.766 kb on - strand, within Pf6N2E2_4932 at 5685.766 kb on - strand, within Pf6N2E2_4932 at 5685.766 kb on - strand, within Pf6N2E2_4932 at 5685.766 kb on - strand, within Pf6N2E2_4932 at 5685.766 kb on - strand, within Pf6N2E2_4932 at 5685.821 kb on + strand at 5685.821 kb on + strand at 5685.822 kb on - strand at 5685.822 kb on - strand at 5685.822 kb on - strand at 5685.822 kb on - strand at 5685.822 kb on - strand at 5685.822 kb on - strand at 5685.822 kb on - strand at 5685.822 kb on - strand at 5687.230 kb on + strand at 5687.230 kb on + strand at 5687.393 kb on + strand, within Pf6N2E2_4935 at 5687.393 kb on + strand, within Pf6N2E2_4935 at 5687.393 kb on + strand, within Pf6N2E2_4935 at 5687.413 kb on + strand at 5687.414 kb on - strand, within Pf6N2E2_4935 at 5687.578 kb on - strand, within Pf6N2E2_4935 at 5687.617 kb on - strand, within Pf6N2E2_4935 at 5687.873 kb on + strand, within Pf6N2E2_4935 at 5687.873 kb on + strand, within Pf6N2E2_4935 at 5687.874 kb on - strand, within Pf6N2E2_4935
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 5,685,740 - Pf6N2E2_4932 0.26 +0.4 5,685,742 - Pf6N2E2_4932 0.28 +0.8 5,685,742 - Pf6N2E2_4932 0.28 +0.0 5,685,742 - Pf6N2E2_4932 0.28 +0.3 5,685,742 - Pf6N2E2_4932 0.28 +1.8 5,685,742 - Pf6N2E2_4932 0.28 +1.5 5,685,742 - Pf6N2E2_4932 0.28 +1.2 5,685,742 - Pf6N2E2_4932 0.28 -0.5 5,685,742 - Pf6N2E2_4932 0.28 +1.3 5,685,742 - Pf6N2E2_4932 0.28 +2.4 5,685,742 - Pf6N2E2_4932 0.28 +0.7 5,685,742 - Pf6N2E2_4932 0.28 +1.8 5,685,742 - Pf6N2E2_4932 0.28 -0.7 5,685,742 - Pf6N2E2_4932 0.28 -1.4 5,685,742 - Pf6N2E2_4932 0.28 -2.8 5,685,746 - Pf6N2E2_4932 0.32 +0.7 5,685,746 - Pf6N2E2_4932 0.32 -0.6 5,685,746 - Pf6N2E2_4932 0.32 +2.5 5,685,748 - Pf6N2E2_4932 0.33 -0.2 5,685,766 - Pf6N2E2_4932 0.49 +0.7 5,685,766 - Pf6N2E2_4932 0.49 +0.9 5,685,766 - Pf6N2E2_4932 0.49 +0.5 5,685,766 - Pf6N2E2_4932 0.49 +0.0 5,685,766 - Pf6N2E2_4932 0.49 +0.9 5,685,821 + +1.0 5,685,821 + +1.7 5,685,822 - +0.5 5,685,822 - -0.6 5,685,822 - +0.2 5,685,822 - +0.5 5,685,822 - +0.2 5,685,822 - +0.4 5,685,822 - -0.0 5,685,822 - -0.5 5,687,230 + -0.1 5,687,230 + -0.3 5,687,393 + Pf6N2E2_4935 0.17 +1.6 5,687,393 + Pf6N2E2_4935 0.17 +1.4 5,687,393 + Pf6N2E2_4935 0.17 +1.0 5,687,413 + -0.6 5,687,414 - Pf6N2E2_4935 0.19 +1.0 5,687,578 - Pf6N2E2_4935 0.33 -0.2 5,687,617 - Pf6N2E2_4935 0.37 +0.8 5,687,873 + Pf6N2E2_4935 0.59 +1.4 5,687,873 + Pf6N2E2_4935 0.59 +0.4 5,687,874 - Pf6N2E2_4935 0.59 -1.2
Or see this region's nucleotide sequence