Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3855

Experiment: octanoate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	octanoate (C)
4,486,774	+		Pf6N2E2_3854	0.23	-2.5
4,486,774	+		Pf6N2E2_3854	0.23	+0.6
4,486,775	-		Pf6N2E2_3854	0.23	+0.6
4,486,775	-		Pf6N2E2_3854	0.23	+1.2
4,486,775	-		Pf6N2E2_3854	0.23	-1.4
4,486,879	+		Pf6N2E2_3854	0.46	+0.8
4,486,879	+		Pf6N2E2_3854	0.46	-0.8
4,486,879	+		Pf6N2E2_3854	0.46	-0.2
4,486,880	-		Pf6N2E2_3854	0.46	-0.0
4,486,880	-		Pf6N2E2_3854	0.46	+0.3
4,486,880	-		Pf6N2E2_3854	0.46	+0.6
4,486,880	-		Pf6N2E2_3854	0.46	-1.5
4,486,921	+		Pf6N2E2_3854	0.56	+1.9
4,486,921	+		Pf6N2E2_3854	0.56	+0.1
4,486,921	+		Pf6N2E2_3854	0.56	-0.2
4,486,922	-		Pf6N2E2_3854	0.56	-0.7
4,486,922	-		Pf6N2E2_3854	0.56	-0.2
4,486,978	+		Pf6N2E2_3854	0.68	+0.6
4,486,978	+		Pf6N2E2_3854	0.68	+0.6
4,486,978	+		Pf6N2E2_3854	0.68	+0.5
4,486,978	+		Pf6N2E2_3854	0.68	-0.5
4,486,978	+		Pf6N2E2_3854	0.68	+0.0
4,486,978	+		Pf6N2E2_3854	0.68	-3.1
4,486,978	+		Pf6N2E2_3854	0.68	-1.2
4,486,978	+		Pf6N2E2_3854	0.68	-2.8
4,486,979	-		Pf6N2E2_3854	0.68	-1.0
4,486,979	-		Pf6N2E2_3854	0.68	-1.1
4,486,979	-		Pf6N2E2_3854	0.68	+0.2
4,486,979	-		Pf6N2E2_3854	0.68	-1.6
4,487,105	-				+0.8
4,487,105	-				-0.4
4,487,105	-				+0.2
4,487,111	+				-1.1
4,487,111	+				-1.3
4,487,112	-				+0.3
4,487,112	-				+0.4
4,487,112	-				+0.4
4,487,112	-				+0.2
4,487,112	-				-0.7
4,487,136	+				+0.2
4,487,137	-				+0.7
4,487,174	+				-0.9
4,487,188	+				-1.5
4,487,189	-				+0.5
4,487,189	-				-1.8
4,487,194	+				-0.3
4,487,194	+				-2.6
4,487,194	+				-0.5
4,487,194	+				+0.5
4,487,194	+				-3.3
4,487,195	-				-2.6
4,487,195	-				-2.1
4,487,195	-				-2.6
4,487,195	-				-0.2
4,487,195	-				-0.0
4,487,328	-				+0.7
4,487,413	-				+0.1
4,487,452	+				-0.2
4,487,452	+				-0.1
4,487,452	+				-0.1
4,487,453	-				-1.4
4,487,453	-				+2.3
4,487,453	-				+1.5
4,487,453	-				+1.4
4,487,500	+				+1.4
4,487,500	+				-0.6
4,487,500	+				-1.7
4,487,500	+				+0.5
4,487,501	-				+0.8
4,487,501	-				-0.2
4,487,501	-				+1.0
4,487,501	-				+0.1
4,487,501	-				+1.4
4,487,501	-				-1.3
4,487,501	-				+0.5
4,487,840	+		Pf6N2E2_3855	0.42	+0.4
4,487,840	+		Pf6N2E2_3855	0.42	+1.6
4,487,840	+		Pf6N2E2_3855	0.42	+0.2
4,487,840	+		Pf6N2E2_3855	0.42	+1.2
4,487,841	-		Pf6N2E2_3855	0.42	-4.0
4,487,841	-		Pf6N2E2_3855	0.42	+0.2
4,487,841	-		Pf6N2E2_3855	0.42	+1.0
4,488,091	+		Pf6N2E2_3855	0.74	+1.6
4,488,091	+		Pf6N2E2_3855	0.74	+1.3
4,488,091	+		Pf6N2E2_3855	0.74	+1.0
4,488,092	-		Pf6N2E2_3855	0.74	+0.9
4,488,092	-		Pf6N2E2_3855	0.74	+0.7
4,488,092	-		Pf6N2E2_3855	0.74	+1.1
4,488,092	-		Pf6N2E2_3855	0.74	+0.7
4,488,092	-		Pf6N2E2_3855	0.74	-1.1
4,488,092	-		Pf6N2E2_3855	0.74	+1.3
4,488,095	+		Pf6N2E2_3855	0.75	+0.5
4,488,095	+		Pf6N2E2_3855	0.75	+1.9
4,488,095	+		Pf6N2E2_3855	0.75	-0.0
4,488,095	+		Pf6N2E2_3855	0.75	+1.1
4,488,095	+		Pf6N2E2_3855	0.75	+1.0
4,488,095	+		Pf6N2E2_3855	0.75	-1.0
4,488,095	+		Pf6N2E2_3855	0.75	-0.9
4,488,096	-		Pf6N2E2_3855	0.75	-0.1
4,488,096	-		Pf6N2E2_3855	0.75	+0.4
4,488,096	-		Pf6N2E2_3855	0.75	+1.2
4,488,096	-		Pf6N2E2_3855	0.75	-0.0
4,488,096	-		Pf6N2E2_3855	0.75	+0.7
4,488,096	-		Pf6N2E2_3855	0.75	+1.5
4,488,096	-		Pf6N2E2_3855	0.75	+0.5
4,488,096	-		Pf6N2E2_3855	0.75	+1.3
4,488,096	-		Pf6N2E2_3855	0.75	-0.2
4,488,096	-		Pf6N2E2_3855	0.75	+1.7
4,488,299	+				-1.9
4,488,299	+				-0.2
4,488,300	-				+2.4
4,488,300	-				+1.6
4,488,300	-				+0.6
4,488,300	-				+0.4
4,488,300	-				-4.0
4,488,300	-				+0.2
4,488,300	-				+0.4
4,488,300	-				-0.7
4,488,300	-				-2.3
4,488,300	-				+1.5
4,488,300	-				-1.7
4,488,300	-				-0.3
4,488,313	+				+0.7
4,488,313	+				-1.0
4,488,313	+				+0.3
4,488,313	+				+1.0
4,488,314	-				+0.2
4,488,314	-				-2.3
4,488,314	-				-2.5
4,488,314	-				-1.7
4,488,628	+		Pf6N2E2_3856	0.43	-0.4
4,488,628	+		Pf6N2E2_3856	0.43	-0.2
4,488,629	-		Pf6N2E2_3856	0.43	+1.0
4,488,724	-		Pf6N2E2_3856	0.56	+0.7
4,488,781	+		Pf6N2E2_3856	0.63	+0.2
4,488,782	-		Pf6N2E2_3856	0.63	+1.8
4,488,850	+		Pf6N2E2_3856	0.72	-0.8
4,488,850	+		Pf6N2E2_3856	0.72	+0.5
4,488,851	-		Pf6N2E2_3856	0.72	+0.4
4,488,851	-		Pf6N2E2_3856	0.72	+0.1
4,488,851	-		Pf6N2E2_3856	0.72	-0.1
4,488,851	-		Pf6N2E2_3856	0.72	-0.5
4,488,851	-		Pf6N2E2_3856	0.72	+0.9
4,488,859	+		Pf6N2E2_3856	0.73	-2.2
4,488,859	+		Pf6N2E2_3856	0.73	+0.6
4,488,859	+		Pf6N2E2_3856	0.73	-0.4
4,488,860	-		Pf6N2E2_3856	0.74	-0.6
4,488,893	-		Pf6N2E2_3856	0.78	+1.2
4,489,011	+				+0.5
4,489,012	-				-2.7
4,489,012	-				+1.0
4,489,012	-				-1.0
4,489,015	+				+0.9
4,489,015	+				-0.9
4,489,015	+				+0.2
4,489,016	-				+0.7
4,489,016	-				+1.1
4,489,016	-				-0.5
4,489,017	+				+0.6
4,489,017	+				+0.4
4,489,017	+				+1.2
4,489,036	+				+0.8
4,489,050	+				-0.5
4,489,050	+				+0.2
4,489,054	+				+0.4
4,489,054	+				-0.7
4,489,054	+				+0.0
4,489,054	+				+0.4
4,489,054	+				+1.1
4,489,054	+				+0.1
4,489,054	+				+0.5
4,489,054	+				-0.7
4,489,054	+				+1.2
4,489,054	+				+0.5
4,489,054	+				+2.1
4,489,054	+				-2.8
4,489,055	-				+0.5
4,489,055	-				+0.4
4,489,055	-				-2.2
4,489,055	-				-0.7
4,489,055	-				+0.3
4,489,055	-				+0.7
4,489,055	-				+1.6
4,489,060	+				+0.5
4,489,060	+				-0.5
4,489,061	-				+1.2
4,489,124	-				+1.1
4,489,270	+		Pf6N2E2_3857	0.19	-1.8
4,489,270	+		Pf6N2E2_3857	0.19	+1.5