Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_610 and Pf1N1B4_611 are separated by 147 nucleotides Pf1N1B4_611 and Pf1N1B4_612 are separated by 133 nucleotides Pf1N1B4_612 and Pf1N1B4_613 overlap by 4 nucleotides
Pf1N1B4_610 - Methyl-accepting chemotaxis transducer, at 703,268 to 705,406
_610
Pf1N1B4_611 - CoA transferase, CAIB/BAIF family, at 705,554 to 706,885
_611
Pf1N1B4_612 - DNA-3-methyladenine glycosylase II (EC 3.2.2.21), at 707,019 to 707,882
_612
Pf1N1B4_613 - Arginine/ornithine antiporter ArcD, at 707,879 to 709,306
_613
Position (kb) 705
706
707 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 705.404 kb on + strand at 705.404 kb on + strand at 705.404 kb on + strand at 705.405 kb on - strand at 705.405 kb on - strand at 705.405 kb on - strand at 705.405 kb on - strand at 705.405 kb on - strand at 705.405 kb on - strand at 705.405 kb on - strand at 705.419 kb on + strand at 705.419 kb on + strand at 705.522 kb on + strand at 705.522 kb on + strand at 705.522 kb on + strand at 705.523 kb on - strand at 705.523 kb on - strand at 705.523 kb on - strand at 705.551 kb on + strand at 705.551 kb on + strand at 705.551 kb on + strand at 705.552 kb on - strand at 705.552 kb on - strand at 705.552 kb on - strand at 705.552 kb on - strand at 705.552 kb on - strand at 705.552 kb on - strand at 705.552 kb on - strand at 705.552 kb on - strand at 705.565 kb on - strand at 705.565 kb on - strand at 705.836 kb on + strand, within Pf1N1B4_611 at 705.837 kb on - strand, within Pf1N1B4_611 at 705.868 kb on + strand, within Pf1N1B4_611 at 705.869 kb on - strand, within Pf1N1B4_611 at 706.516 kb on - strand, within Pf1N1B4_611 at 706.613 kb on + strand, within Pf1N1B4_611 at 706.997 kb on - strand at 707.063 kb on - strand at 707.209 kb on + strand, within Pf1N1B4_612 at 707.210 kb on - strand, within Pf1N1B4_612 at 707.210 kb on - strand, within Pf1N1B4_612 at 707.210 kb on - strand, within Pf1N1B4_612 at 707.210 kb on - strand, within Pf1N1B4_612 at 707.210 kb on - strand, within Pf1N1B4_612 at 707.397 kb on + strand, within Pf1N1B4_612 at 707.397 kb on + strand, within Pf1N1B4_612 at 707.398 kb on - strand at 707.398 kb on - strand, within Pf1N1B4_612 at 707.398 kb on - strand, within Pf1N1B4_612 at 707.398 kb on - strand, within Pf1N1B4_612 at 707.398 kb on - strand, within Pf1N1B4_612 at 707.398 kb on - strand, within Pf1N1B4_612 at 707.777 kb on - strand, within Pf1N1B4_612 at 707.851 kb on + strand at 707.852 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 705,404 + +1.3 705,404 + -0.3 705,404 + -1.4 705,405 - +1.3 705,405 - -0.3 705,405 - +0.0 705,405 - +0.3 705,405 - -0.8 705,405 - -1.2 705,405 - -1.4 705,419 + +0.6 705,419 + +3.0 705,522 + +0.0 705,522 + -0.2 705,522 + +0.0 705,523 - -0.2 705,523 - -1.6 705,523 - -1.2 705,551 + +0.3 705,551 + +0.2 705,551 + -0.9 705,552 - -0.8 705,552 - -0.2 705,552 - -1.0 705,552 - -2.2 705,552 - -0.1 705,552 - -0.6 705,552 - +0.1 705,552 - +0.3 705,565 - -0.3 705,565 - +0.0 705,836 + Pf1N1B4_611 0.21 -0.2 705,837 - Pf1N1B4_611 0.21 +0.0 705,868 + Pf1N1B4_611 0.24 -0.7 705,869 - Pf1N1B4_611 0.24 -1.3 706,516 - Pf1N1B4_611 0.72 -1.2 706,613 + Pf1N1B4_611 0.80 -1.8 706,997 - -0.6 707,063 - -1.0 707,209 + Pf1N1B4_612 0.22 +0.4 707,210 - Pf1N1B4_612 0.22 -2.2 707,210 - Pf1N1B4_612 0.22 +0.2 707,210 - Pf1N1B4_612 0.22 +1.0 707,210 - Pf1N1B4_612 0.22 +0.7 707,210 - Pf1N1B4_612 0.22 -0.3 707,397 + Pf1N1B4_612 0.44 -1.3 707,397 + Pf1N1B4_612 0.44 -0.3 707,398 - +0.0 707,398 - Pf1N1B4_612 0.44 +0.2 707,398 - Pf1N1B4_612 0.44 +0.2 707,398 - Pf1N1B4_612 0.44 -0.4 707,398 - Pf1N1B4_612 0.44 +0.2 707,398 - Pf1N1B4_612 0.44 +0.6 707,777 - Pf1N1B4_612 0.88 -2.3 707,851 + -0.4 707,852 - -0.6
Or see this region's nucleotide sequence