Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5472 and Pf1N1B4_5473 are separated by 189 nucleotides
Pf1N1B4_5472 - hypothetical protein, at 223,466 to 223,975
_5472
Pf1N1B4_5473 - FIG00761799: membrane protein, at 224,165 to 224,839
_5473
Position (kb) 223
224 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 222.486 kb on + strand at 222.486 kb on + strand at 222.486 kb on + strand at 222.486 kb on + strand at 222.486 kb on + strand at 222.486 kb on + strand at 222.486 kb on + strand at 222.487 kb on - strand at 222.487 kb on - strand at 222.517 kb on - strand at 222.706 kb on + strand at 222.706 kb on + strand at 222.707 kb on - strand at 222.732 kb on + strand at 222.732 kb on + strand at 222.732 kb on + strand at 222.797 kb on + strand at 222.829 kb on + strand at 222.829 kb on + strand at 222.829 kb on + strand at 222.829 kb on + strand at 222.829 kb on + strand at 222.829 kb on + strand at 222.830 kb on - strand at 222.830 kb on - strand at 222.869 kb on + strand at 222.869 kb on + strand at 222.935 kb on - strand at 222.935 kb on - strand at 222.935 kb on - strand at 222.959 kb on - strand at 222.964 kb on + strand at 222.964 kb on + strand at 222.965 kb on - strand at 222.965 kb on - strand at 222.967 kb on + strand at 222.968 kb on - strand at 222.968 kb on - strand at 222.968 kb on - strand at 222.968 kb on - strand at 222.968 kb on - strand at 222.968 kb on - strand at 222.992 kb on - strand at 222.992 kb on - strand at 222.992 kb on - strand at 223.023 kb on - strand at 223.023 kb on - strand at 223.054 kb on + strand at 223.054 kb on + strand at 223.054 kb on + strand at 223.055 kb on - strand at 223.055 kb on - strand at 223.055 kb on - strand at 223.055 kb on - strand at 223.055 kb on - strand at 223.055 kb on - strand at 223.055 kb on - strand at 223.055 kb on - strand at 223.055 kb on - strand at 223.055 kb on - strand at 223.093 kb on - strand at 223.139 kb on - strand at 223.139 kb on - strand at 223.171 kb on + strand at 223.172 kb on - strand at 223.172 kb on - strand at 223.172 kb on - strand at 223.179 kb on + strand at 223.179 kb on + strand at 223.180 kb on - strand at 223.180 kb on - strand at 223.244 kb on + strand at 223.244 kb on + strand at 223.245 kb on - strand at 223.245 kb on - strand at 223.245 kb on - strand at 223.245 kb on - strand at 223.245 kb on - strand at 223.278 kb on + strand at 223.279 kb on - strand at 223.279 kb on - strand at 223.427 kb on - strand at 223.427 kb on - strand at 223.427 kb on - strand at 223.467 kb on + strand at 223.467 kb on + strand at 223.467 kb on + strand at 223.467 kb on + strand at 223.467 kb on + strand at 223.467 kb on + strand at 223.467 kb on + strand at 223.468 kb on - strand at 223.468 kb on - strand at 223.468 kb on - strand at 223.468 kb on - strand at 223.509 kb on + strand at 223.509 kb on + strand at 223.509 kb on + strand at 223.509 kb on + strand at 223.510 kb on - strand at 223.545 kb on + strand, within Pf1N1B4_5472 at 223.545 kb on + strand, within Pf1N1B4_5472 at 223.545 kb on + strand, within Pf1N1B4_5472 at 223.545 kb on + strand, within Pf1N1B4_5472 at 223.546 kb on - strand, within Pf1N1B4_5472 at 223.546 kb on - strand, within Pf1N1B4_5472 at 223.546 kb on - strand, within Pf1N1B4_5472 at 223.546 kb on - strand, within Pf1N1B4_5472 at 223.546 kb on - strand, within Pf1N1B4_5472 at 223.770 kb on + strand, within Pf1N1B4_5472 at 223.834 kb on - strand, within Pf1N1B4_5472 at 223.834 kb on - strand, within Pf1N1B4_5472 at 223.834 kb on - strand, within Pf1N1B4_5472 at 223.952 kb on + strand at 223.953 kb on - strand at 223.953 kb on - strand at 224.061 kb on + strand at 224.080 kb on + strand at 224.080 kb on + strand at 224.081 kb on - strand at 224.091 kb on + strand at 224.091 kb on + strand at 224.091 kb on + strand at 224.092 kb on - strand at 224.121 kb on - strand at 224.174 kb on + strand at 224.174 kb on + strand at 224.234 kb on + strand, within Pf1N1B4_5473 at 224.235 kb on - strand, within Pf1N1B4_5473 at 224.235 kb on - strand, within Pf1N1B4_5473 at 224.235 kb on - strand, within Pf1N1B4_5473 at 224.238 kb on + strand, within Pf1N1B4_5473 at 224.238 kb on + strand, within Pf1N1B4_5473 at 224.238 kb on + strand, within Pf1N1B4_5473 at 224.238 kb on + strand, within Pf1N1B4_5473 at 224.238 kb on + strand at 224.239 kb on - strand, within Pf1N1B4_5473 at 224.239 kb on - strand, within Pf1N1B4_5473 at 224.239 kb on - strand, within Pf1N1B4_5473 at 224.239 kb on - strand, within Pf1N1B4_5473 at 224.239 kb on - strand, within Pf1N1B4_5473 at 224.239 kb on - strand, within Pf1N1B4_5473 at 224.240 kb on + strand, within Pf1N1B4_5473 at 224.240 kb on + strand, within Pf1N1B4_5473 at 224.241 kb on - strand, within Pf1N1B4_5473 at 224.241 kb on - strand, within Pf1N1B4_5473 at 224.241 kb on - strand, within Pf1N1B4_5473 at 224.271 kb on - strand, within Pf1N1B4_5473 at 224.307 kb on - strand, within Pf1N1B4_5473 at 224.307 kb on - strand, within Pf1N1B4_5473 at 224.312 kb on + strand, within Pf1N1B4_5473 at 224.312 kb on + strand, within Pf1N1B4_5473 at 224.312 kb on + strand at 224.312 kb on + strand, within Pf1N1B4_5473 at 224.312 kb on + strand, within Pf1N1B4_5473 at 224.313 kb on - strand at 224.313 kb on - strand, within Pf1N1B4_5473 at 224.313 kb on - strand, within Pf1N1B4_5473 at 224.316 kb on + strand at 224.317 kb on - strand, within Pf1N1B4_5473 at 224.393 kb on + strand, within Pf1N1B4_5473 at 224.393 kb on + strand, within Pf1N1B4_5473 at 224.393 kb on + strand, within Pf1N1B4_5473 at 224.394 kb on - strand, within Pf1N1B4_5473 at 224.561 kb on + strand, within Pf1N1B4_5473 at 224.562 kb on - strand at 224.569 kb on + strand, within Pf1N1B4_5473 at 224.628 kb on - strand, within Pf1N1B4_5473 at 224.778 kb on + strand at 224.778 kb on + strand at 224.779 kb on - strand at 224.824 kb on + strand at 224.841 kb on + strand at 224.841 kb on + strand at 224.841 kb on + strand at 224.841 kb on + strand at 224.841 kb on + strand at 224.841 kb on + strand at 224.841 kb on + strand at 224.841 kb on + strand at 224.841 kb on + strand at 224.841 kb on + strand at 224.841 kb on + strand at 224.841 kb on + strand at 224.841 kb on + strand at 224.842 kb on - strand at 224.842 kb on - strand at 224.842 kb on - strand at 224.842 kb on - strand at 224.842 kb on - strand at 224.843 kb on + strand at 224.843 kb on + strand at 224.843 kb on + strand at 224.843 kb on + strand at 224.843 kb on + strand at 224.843 kb on + strand at 224.843 kb on + strand at 224.843 kb on + strand at 224.844 kb on - strand at 224.844 kb on - strand at 224.899 kb on + strand at 224.899 kb on + strand at 224.899 kb on + strand at 224.899 kb on + strand at 224.899 kb on + strand at 224.952 kb on + strand at 224.958 kb on - strand at 224.969 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 222,486 + +1.2 222,486 + +0.2 222,486 + +0.0 222,486 + +1.7 222,486 + -1.0 222,486 + +0.5 222,486 + -1.1 222,487 - +2.0 222,487 - -1.0 222,517 - -0.3 222,706 + -1.0 222,706 + -1.2 222,707 - +1.3 222,732 + -1.3 222,732 + +1.3 222,732 + -0.3 222,797 + +0.0 222,829 + -0.5 222,829 + -0.3 222,829 + +0.0 222,829 + +1.0 222,829 + -1.1 222,829 + +1.5 222,830 - +1.6 222,830 - -0.7 222,869 + +1.0 222,869 + -0.2 222,935 - +1.2 222,935 - +1.6 222,935 - -0.6 222,959 - +0.8 222,964 + -0.7 222,964 + +0.0 222,965 - +1.6 222,965 - +1.8 222,967 + +1.0 222,968 - +0.7 222,968 - -0.5 222,968 - +0.2 222,968 - -0.1 222,968 - +0.7 222,968 - +0.3 222,992 - +0.5 222,992 - +0.5 222,992 - +1.5 223,023 - -0.5 223,023 - +1.6 223,054 + +2.6 223,054 + +0.7 223,054 + -0.8 223,055 - +0.6 223,055 - +1.1 223,055 - -1.8 223,055 - +0.5 223,055 - -0.0 223,055 - +0.7 223,055 - +0.6 223,055 - -0.4 223,055 - +1.0 223,055 - -0.8 223,093 - +2.0 223,139 - +0.2 223,139 - -0.3 223,171 + -1.0 223,172 - +1.3 223,172 - -0.0 223,172 - -0.5 223,179 + +0.9 223,179 + +0.0 223,180 - -0.8 223,180 - -1.7 223,244 + +0.0 223,244 + +2.6 223,245 - +0.0 223,245 - +1.0 223,245 - -0.8 223,245 - -0.6 223,245 - -0.8 223,278 + -0.3 223,279 - +1.0 223,279 - +0.0 223,427 - -0.8 223,427 - +1.0 223,427 - -0.5 223,467 + +1.3 223,467 + -1.0 223,467 + -0.3 223,467 + +1.0 223,467 + +0.2 223,467 + +0.6 223,467 + -0.3 223,468 - +1.5 223,468 - -1.0 223,468 - +1.6 223,468 - +1.0 223,509 + -0.4 223,509 + +1.5 223,509 + -1.0 223,509 + -1.7 223,510 - +0.5 223,545 + Pf1N1B4_5472 0.15 -0.5 223,545 + Pf1N1B4_5472 0.15 +0.7 223,545 + Pf1N1B4_5472 0.15 +0.8 223,545 + Pf1N1B4_5472 0.15 -1.1 223,546 - Pf1N1B4_5472 0.16 -1.5 223,546 - Pf1N1B4_5472 0.16 +0.2 223,546 - Pf1N1B4_5472 0.16 +0.2 223,546 - Pf1N1B4_5472 0.16 -0.1 223,546 - Pf1N1B4_5472 0.16 -1.4 223,770 + Pf1N1B4_5472 0.60 -1.0 223,834 - Pf1N1B4_5472 0.72 -1.0 223,834 - Pf1N1B4_5472 0.72 -1.1 223,834 - Pf1N1B4_5472 0.72 +0.7 223,952 + +1.2 223,953 - -0.8 223,953 - +0.3 224,061 + -0.7 224,080 + +0.7 224,080 + +0.0 224,081 - -0.8 224,091 + -1.0 224,091 + +0.5 224,091 + -1.4 224,092 - +2.0 224,121 - +0.0 224,174 + +1.0 224,174 + +0.2 224,234 + Pf1N1B4_5473 0.10 -1.7 224,235 - Pf1N1B4_5473 0.10 +1.6 224,235 - Pf1N1B4_5473 0.10 -0.2 224,235 - Pf1N1B4_5473 0.10 -0.5 224,238 + Pf1N1B4_5473 0.11 -1.3 224,238 + Pf1N1B4_5473 0.11 -1.0 224,238 + Pf1N1B4_5473 0.11 +2.4 224,238 + Pf1N1B4_5473 0.11 -0.6 224,238 + -0.5 224,239 - Pf1N1B4_5473 0.11 +1.0 224,239 - Pf1N1B4_5473 0.11 +0.3 224,239 - Pf1N1B4_5473 0.11 -0.8 224,239 - Pf1N1B4_5473 0.11 +0.1 224,239 - Pf1N1B4_5473 0.11 +0.5 224,239 - Pf1N1B4_5473 0.11 -0.9 224,240 + Pf1N1B4_5473 0.11 -0.7 224,240 + Pf1N1B4_5473 0.11 -1.1 224,241 - Pf1N1B4_5473 0.11 +1.0 224,241 - Pf1N1B4_5473 0.11 -0.2 224,241 - Pf1N1B4_5473 0.11 -0.8 224,271 - Pf1N1B4_5473 0.16 +0.0 224,307 - Pf1N1B4_5473 0.21 +0.3 224,307 - Pf1N1B4_5473 0.21 +0.5 224,312 + Pf1N1B4_5473 0.22 +0.5 224,312 + Pf1N1B4_5473 0.22 +0.7 224,312 + +1.0 224,312 + Pf1N1B4_5473 0.22 -1.7 224,312 + Pf1N1B4_5473 0.22 +0.7 224,313 - +1.0 224,313 - Pf1N1B4_5473 0.22 +0.5 224,313 - Pf1N1B4_5473 0.22 -1.0 224,316 + +1.0 224,317 - Pf1N1B4_5473 0.23 +0.9 224,393 + Pf1N1B4_5473 0.34 -1.4 224,393 + Pf1N1B4_5473 0.34 +1.0 224,393 + Pf1N1B4_5473 0.34 -0.8 224,394 - Pf1N1B4_5473 0.34 +0.7 224,561 + Pf1N1B4_5473 0.59 -1.0 224,562 - +0.7 224,569 + Pf1N1B4_5473 0.60 -1.1 224,628 - Pf1N1B4_5473 0.69 -1.4 224,778 + +0.1 224,778 + -0.8 224,779 - +1.0 224,824 + +3.0 224,841 + +1.0 224,841 + -0.3 224,841 + +0.0 224,841 + +0.6 224,841 + -0.0 224,841 + -1.3 224,841 + -0.5 224,841 + +1.2 224,841 + +0.1 224,841 + +0.0 224,841 + -0.5 224,841 + -2.0 224,841 + +0.6 224,842 - +1.5 224,842 - +0.6 224,842 - -0.4 224,842 - +1.5 224,842 - +2.0 224,843 + +0.7 224,843 + +1.0 224,843 + -0.8 224,843 + -0.0 224,843 + +1.0 224,843 + -0.8 224,843 + +0.8 224,843 + -1.0 224,844 - -0.8 224,844 - +0.8 224,899 + +2.0 224,899 + +1.6 224,899 + +2.0 224,899 + -1.0 224,899 + +0.5 224,952 + -0.3 224,958 - +0.1 224,969 + +1.8
Or see this region's nucleotide sequence