Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2711

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2709 and Pf1N1B4_2710 are separated by 5 nucleotidesPf1N1B4_2710 and Pf1N1B4_2711 overlap by 8 nucleotidesPf1N1B4_2711 and Pf1N1B4_2712 are separated by 214 nucleotides Pf1N1B4_2709 - Magnesium and cobalt efflux protein CorC, at 3,047,156 to 3,047,995 _2709 Pf1N1B4_2710 - Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly, at 3,048,001 to 3,048,495 _2710 Pf1N1B4_2711 - Phosphate starvation-inducible protein PhoH, predicted ATPase, at 3,048,488 to 3,049,504 _2711 Pf1N1B4_2712 - tRNA-i(6)A37 methylthiotransferase, at 3,049,719 to 3,051,095 _2712 Position (kb) 3048 3049 3050Strain fitness (log2 ratio) -1 0 1 2at 3047.807 kb on + strand, within Pf1N1B4_2709at 3048.023 kb on - strandat 3048.838 kb on - strand, within Pf1N1B4_2711at 3048.838 kb on - strand, within Pf1N1B4_2711at 3048.889 kb on - strand, within Pf1N1B4_2711at 3049.072 kb on - strand, within Pf1N1B4_2711at 3049.072 kb on - strand, within Pf1N1B4_2711at 3049.072 kb on - strand, within Pf1N1B4_2711at 3049.138 kb on - strandat 3049.533 kb on - strandat 3049.579 kb on - strandat 3049.580 kb on + strandat 3049.660 kb on + strandat 3049.660 kb on + strandat 3050.048 kb on - strand, within Pf1N1B4_2712at 3050.048 kb on - strand, within Pf1N1B4_2712at 3050.192 kb on - strand, within Pf1N1B4_2712

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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3,047,807 + Pf1N1B4_2709 0.78 -0.1
3,048,023 - -0.1
3,048,838 - Pf1N1B4_2711 0.34 -0.9
3,048,838 - Pf1N1B4_2711 0.34 -0.9
3,048,889 - Pf1N1B4_2711 0.39 -0.3
3,049,072 - Pf1N1B4_2711 0.57 -0.8
3,049,072 - Pf1N1B4_2711 0.57 -0.7
3,049,072 - Pf1N1B4_2711 0.57 -1.3
3,049,138 - +1.9
3,049,533 - +1.9
3,049,579 - -0.1
3,049,580 + -0.0
3,049,660 + +0.7
3,049,660 + -0.3
3,050,048 - Pf1N1B4_2712 0.24 -0.3
3,050,048 - Pf1N1B4_2712 0.24 +0.1
3,050,192 - Pf1N1B4_2712 0.34 +0.3

Or see this region's nucleotide sequence