Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1477

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1476 and Pf1N1B4_1477 are separated by 11 nucleotidesPf1N1B4_1477 and Pf1N1B4_1478 are separated by 283 nucleotides Pf1N1B4_1476 - Pyruvate dehydrogenase E1 component (EC 1.2.4.1), at 1,692,445 to 1,695,090 _1476 Pf1N1B4_1477 - Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12), at 1,695,102 to 1,697,069 _1477 Pf1N1B4_1478 - Phosphodiesterase/alkaline phosphatase D-like, at 1,697,353 to 1,698,747 _1478 Position (kb) 1695 1696 1697 1698Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1694.209 kb on + strand, within Pf1N1B4_1476at 1694.219 kb on - strand, within Pf1N1B4_1476at 1694.482 kb on + strand, within Pf1N1B4_1476at 1697.067 kb on + strandat 1697.067 kb on + strandat 1697.068 kb on - strandat 1697.068 kb on - strandat 1697.197 kb on + strandat 1697.198 kb on - strandat 1697.198 kb on - strandat 1697.216 kb on + strandat 1697.217 kb on - strandat 1697.226 kb on - strandat 1697.272 kb on + strandat 1697.272 kb on + strandat 1697.272 kb on + strandat 1697.278 kb on + strandat 1697.278 kb on + strandat 1697.282 kb on + strandat 1697.323 kb on + strandat 1697.324 kb on - strandat 1697.324 kb on - strandat 1697.327 kb on + strandat 1697.328 kb on - strandat 1697.333 kb on + strandat 1697.333 kb on + strandat 1697.334 kb on - strandat 1697.334 kb on - strandat 1697.398 kb on - strandat 1697.398 kb on - strandat 1697.398 kb on - strandat 1697.448 kb on - strandat 1697.501 kb on + strand, within Pf1N1B4_1478at 1697.501 kb on + strand, within Pf1N1B4_1478at 1697.502 kb on - strand, within Pf1N1B4_1478at 1697.576 kb on - strand, within Pf1N1B4_1478at 1697.576 kb on - strand, within Pf1N1B4_1478at 1697.668 kb on + strand, within Pf1N1B4_1478at 1697.713 kb on + strand, within Pf1N1B4_1478at 1697.713 kb on + strand, within Pf1N1B4_1478at 1697.713 kb on + strand, within Pf1N1B4_1478at 1697.714 kb on - strand, within Pf1N1B4_1478at 1697.714 kb on - strand, within Pf1N1B4_1478at 1697.714 kb on - strand, within Pf1N1B4_1478at 1697.714 kb on - strand, within Pf1N1B4_1478at 1697.714 kb on - strand, within Pf1N1B4_1478at 1697.714 kb on - strand, within Pf1N1B4_1478at 1697.714 kb on - strand, within Pf1N1B4_1478at 1697.714 kb on - strand, within Pf1N1B4_1478at 1697.714 kb on - strand, within Pf1N1B4_1478at 1697.714 kb on - strand, within Pf1N1B4_1478at 1697.714 kb on - strand, within Pf1N1B4_1478at 1697.714 kb on - strand, within Pf1N1B4_1478at 1697.745 kb on + strand, within Pf1N1B4_1478at 1697.864 kb on - strand, within Pf1N1B4_1478at 1697.864 kb on - strand, within Pf1N1B4_1478at 1697.864 kb on - strand, within Pf1N1B4_1478at 1697.864 kb on - strand, within Pf1N1B4_1478at 1697.902 kb on + strand, within Pf1N1B4_1478at 1697.903 kb on - strand, within Pf1N1B4_1478at 1697.949 kb on + strand, within Pf1N1B4_1478at 1697.950 kb on - strand, within Pf1N1B4_1478at 1697.980 kb on + strand, within Pf1N1B4_1478at 1697.980 kb on + strand, within Pf1N1B4_1478at 1697.980 kb on + strand, within Pf1N1B4_1478at 1697.981 kb on - strand, within Pf1N1B4_1478at 1697.981 kb on - strand, within Pf1N1B4_1478at 1698.047 kb on - strand, within Pf1N1B4_1478at 1698.047 kb on - strand, within Pf1N1B4_1478at 1698.051 kb on - strand, within Pf1N1B4_1478at 1698.053 kb on - strand, within Pf1N1B4_1478

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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1,694,209 + Pf1N1B4_1476 0.67 -0.6
1,694,219 - Pf1N1B4_1476 0.67 -0.2
1,694,482 + Pf1N1B4_1476 0.77 -2.2
1,697,067 + -3.0
1,697,067 + -1.6
1,697,068 - -1.4
1,697,068 - -1.2
1,697,197 + +0.6
1,697,198 - +1.4
1,697,198 - +0.2
1,697,216 + -0.9
1,697,217 - -1.2
1,697,226 - +1.0
1,697,272 + -0.8
1,697,272 + +0.4
1,697,272 + -0.5
1,697,278 + -0.4
1,697,278 + +0.4
1,697,282 + +1.4
1,697,323 + -0.3
1,697,324 - -1.0
1,697,324 - +0.1
1,697,327 + +0.4
1,697,328 - +0.9
1,697,333 + -0.8
1,697,333 + +1.0
1,697,334 - +0.9
1,697,334 - -0.9
1,697,398 - -2.3
1,697,398 - -0.9
1,697,398 - -0.3
1,697,448 - +1.1
1,697,501 + Pf1N1B4_1478 0.11 +0.4
1,697,501 + Pf1N1B4_1478 0.11 -0.6
1,697,502 - Pf1N1B4_1478 0.11 +2.4
1,697,576 - Pf1N1B4_1478 0.16 +0.6
1,697,576 - Pf1N1B4_1478 0.16 +0.4
1,697,668 + Pf1N1B4_1478 0.23 -0.2
1,697,713 + Pf1N1B4_1478 0.26 +0.6
1,697,713 + Pf1N1B4_1478 0.26 -0.5
1,697,713 + Pf1N1B4_1478 0.26 -0.0
1,697,714 - Pf1N1B4_1478 0.26 -1.8
1,697,714 - Pf1N1B4_1478 0.26 -0.2
1,697,714 - Pf1N1B4_1478 0.26 -1.2
1,697,714 - Pf1N1B4_1478 0.26 -1.8
1,697,714 - Pf1N1B4_1478 0.26 +0.4
1,697,714 - Pf1N1B4_1478 0.26 +0.2
1,697,714 - Pf1N1B4_1478 0.26 -0.5
1,697,714 - Pf1N1B4_1478 0.26 -1.4
1,697,714 - Pf1N1B4_1478 0.26 +0.0
1,697,714 - Pf1N1B4_1478 0.26 -0.9
1,697,714 - Pf1N1B4_1478 0.26 +0.1
1,697,714 - Pf1N1B4_1478 0.26 +1.1
1,697,745 + Pf1N1B4_1478 0.28 +0.1
1,697,864 - Pf1N1B4_1478 0.37 -1.8
1,697,864 - Pf1N1B4_1478 0.37 +0.2
1,697,864 - Pf1N1B4_1478 0.37 +0.4
1,697,864 - Pf1N1B4_1478 0.37 -0.4
1,697,902 + Pf1N1B4_1478 0.39 +0.6
1,697,903 - Pf1N1B4_1478 0.39 +0.2
1,697,949 + Pf1N1B4_1478 0.43 -0.7
1,697,950 - Pf1N1B4_1478 0.43 +0.9
1,697,980 + Pf1N1B4_1478 0.45 +0.1
1,697,980 + Pf1N1B4_1478 0.45 +0.4
1,697,980 + Pf1N1B4_1478 0.45 +0.1
1,697,981 - Pf1N1B4_1478 0.45 +1.1
1,697,981 - Pf1N1B4_1478 0.45 -1.2
1,698,047 - Pf1N1B4_1478 0.50 -0.0
1,698,047 - Pf1N1B4_1478 0.50 +0.4
1,698,051 - Pf1N1B4_1478 0.50 -0.6
1,698,053 - Pf1N1B4_1478 0.50 -0.3

Or see this region's nucleotide sequence