Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS17905

Experiment: Growth at 30C; with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS17895 and PFLU_RS17900 overlap by 4 nucleotidesPFLU_RS17900 and PFLU_RS17905 overlap by 4 nucleotidesPFLU_RS17905 and PFLU_RS17910 are separated by 31 nucleotides PFLU_RS17895: PFLU_RS17895 - glycosyltransferase family 2 protein, at 4,062,844 to 4,063,779 _RS17895 PFLU_RS17900: PFLU_RS17900 - acetyltransferase, at 4,063,776 to 4,064,345 _RS17900 PFLU_RS17905: PFLU_RS17905 - glycosyltransferase, at 4,064,342 to 4,065,487 _RS17905 PFLU_RS17910: PFLU_RS17910 - O-antigen ligase family protein, at 4,065,519 to 4,066,841 _RS17910 Position (kb) 4064 4065 4066Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4063.425 kb on + strand, within PFLU_RS17895at 4063.558 kb on + strand, within PFLU_RS17895at 4063.559 kb on - strand, within PFLU_RS17895at 4063.742 kb on + strandat 4063.742 kb on + strandat 4063.742 kb on + strandat 4063.742 kb on + strandat 4064.006 kb on - strand, within PFLU_RS17900at 4064.006 kb on - strand, within PFLU_RS17900at 4064.025 kb on + strand, within PFLU_RS17900at 4064.025 kb on + strand, within PFLU_RS17900at 4064.025 kb on + strand, within PFLU_RS17900at 4064.026 kb on - strand, within PFLU_RS17900at 4064.083 kb on + strand, within PFLU_RS17900at 4064.084 kb on - strand, within PFLU_RS17900at 4064.084 kb on - strand, within PFLU_RS17900at 4064.084 kb on - strand, within PFLU_RS17900at 4064.161 kb on + strand, within PFLU_RS17900at 4064.162 kb on - strand, within PFLU_RS17900at 4064.260 kb on + strand, within PFLU_RS17900at 4064.260 kb on + strand, within PFLU_RS17900at 4064.260 kb on + strand, within PFLU_RS17900at 4064.260 kb on + strand, within PFLU_RS17900at 4064.260 kb on + strand, within PFLU_RS17900at 4064.260 kb on + strand, within PFLU_RS17900at 4064.260 kb on + strand, within PFLU_RS17900at 4064.261 kb on + strand, within PFLU_RS17900at 4064.261 kb on - strand, within PFLU_RS17900at 4064.261 kb on - strand, within PFLU_RS17900at 4064.261 kb on - strand, within PFLU_RS17900at 4064.261 kb on - strand, within PFLU_RS17900at 4064.330 kb on + strandat 4064.364 kb on - strandat 4064.551 kb on + strand, within PFLU_RS17905at 4064.552 kb on - strand, within PFLU_RS17905at 4064.552 kb on - strand, within PFLU_RS17905at 4064.658 kb on + strand, within PFLU_RS17905at 4064.659 kb on - strand, within PFLU_RS17905at 4064.659 kb on - strand, within PFLU_RS17905at 4064.962 kb on + strand, within PFLU_RS17905at 4064.962 kb on + strand, within PFLU_RS17905at 4065.093 kb on + strand, within PFLU_RS17905at 4065.162 kb on + strand, within PFLU_RS17905at 4065.163 kb on - strand, within PFLU_RS17905at 4065.171 kb on + strand, within PFLU_RS17905at 4065.172 kb on - strand, within PFLU_RS17905at 4065.172 kb on - strand, within PFLU_RS17905at 4065.475 kb on + strandat 4065.476 kb on - strandat 4065.476 kb on - strandat 4065.476 kb on - strandat 4065.479 kb on + strandat 4065.479 kb on + strandat 4065.480 kb on - strandat 4065.677 kb on - strand, within PFLU_RS17910at 4065.677 kb on - strand, within PFLU_RS17910at 4065.786 kb on + strand, within PFLU_RS17910at 4065.902 kb on - strand, within PFLU_RS17910at 4065.979 kb on + strand, within PFLU_RS17910at 4065.979 kb on + strand, within PFLU_RS17910at 4065.980 kb on - strand, within PFLU_RS17910at 4066.053 kb on - strand, within PFLU_RS17910at 4066.117 kb on + strand, within PFLU_RS17910at 4066.117 kb on + strand, within PFLU_RS17910at 4066.117 kb on + strand, within PFLU_RS17910at 4066.117 kb on + strand, within PFLU_RS17910at 4066.117 kb on + strand, within PFLU_RS17910at 4066.117 kb on + strand, within PFLU_RS17910at 4066.117 kb on + strand, within PFLU_RS17910at 4066.117 kb on + strand, within PFLU_RS17910at 4066.118 kb on - strand, within PFLU_RS17910at 4066.118 kb on - strand, within PFLU_RS17910at 4066.118 kb on - strand, within PFLU_RS17910at 4066.118 kb on - strand, within PFLU_RS17910at 4066.118 kb on - strand, within PFLU_RS17910at 4066.118 kb on - strand, within PFLU_RS17910at 4066.118 kb on - strand, within PFLU_RS17910at 4066.186 kb on + strand, within PFLU_RS17910at 4066.186 kb on + strand, within PFLU_RS17910at 4066.187 kb on - strand, within PFLU_RS17910at 4066.264 kb on + strand, within PFLU_RS17910at 4066.264 kb on + strand, within PFLU_RS17910at 4066.264 kb on + strand, within PFLU_RS17910at 4066.264 kb on + strand, within PFLU_RS17910at 4066.264 kb on + strand, within PFLU_RS17910at 4066.264 kb on + strand, within PFLU_RS17910at 4066.264 kb on + strand, within PFLU_RS17910at 4066.264 kb on + strand, within PFLU_RS17910at 4066.265 kb on - strand, within PFLU_RS17910at 4066.265 kb on - strand, within PFLU_RS17910at 4066.265 kb on - strand, within PFLU_RS17910at 4066.265 kb on - strand, within PFLU_RS17910at 4066.265 kb on - strand, within PFLU_RS17910at 4066.265 kb on - strand, within PFLU_RS17910at 4066.284 kb on - strand, within PFLU_RS17910at 4066.289 kb on + strand, within PFLU_RS17910at 4066.366 kb on + strand, within PFLU_RS17910at 4066.366 kb on + strand, within PFLU_RS17910at 4066.367 kb on - strand, within PFLU_RS17910at 4066.367 kb on - strand, within PFLU_RS17910at 4066.387 kb on + strand, within PFLU_RS17910at 4066.388 kb on - strand, within PFLU_RS17910at 4066.388 kb on - strand, within PFLU_RS17910

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 30C; with MOPS
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4,063,425 + PFLU_RS17895 0.62 -0.6
4,063,558 + PFLU_RS17895 0.76 -1.8
4,063,559 - PFLU_RS17895 0.76 -1.7
4,063,742 + -1.0
4,063,742 + +0.4
4,063,742 + -2.2
4,063,742 + -0.2
4,064,006 - PFLU_RS17900 0.40 -1.4
4,064,006 - PFLU_RS17900 0.40 -0.5
4,064,025 + PFLU_RS17900 0.44 -1.2
4,064,025 + PFLU_RS17900 0.44 +1.5
4,064,025 + PFLU_RS17900 0.44 -0.8
4,064,026 - PFLU_RS17900 0.44 +0.4
4,064,083 + PFLU_RS17900 0.54 +0.2
4,064,084 - PFLU_RS17900 0.54 -0.5
4,064,084 - PFLU_RS17900 0.54 +1.2
4,064,084 - PFLU_RS17900 0.54 +0.4
4,064,161 + PFLU_RS17900 0.68 +0.3
4,064,162 - PFLU_RS17900 0.68 -0.6
4,064,260 + PFLU_RS17900 0.85 -0.2
4,064,260 + PFLU_RS17900 0.85 +0.6
4,064,260 + PFLU_RS17900 0.85 -0.3
4,064,260 + PFLU_RS17900 0.85 -0.7
4,064,260 + PFLU_RS17900 0.85 +3.3
4,064,260 + PFLU_RS17900 0.85 +2.4
4,064,260 + PFLU_RS17900 0.85 -1.2
4,064,261 + PFLU_RS17900 0.85 -0.4
4,064,261 - PFLU_RS17900 0.85 +3.1
4,064,261 - PFLU_RS17900 0.85 +0.6
4,064,261 - PFLU_RS17900 0.85 +0.5
4,064,261 - PFLU_RS17900 0.85 +0.5
4,064,330 + +0.0
4,064,364 - +1.6
4,064,551 + PFLU_RS17905 0.18 +1.6
4,064,552 - PFLU_RS17905 0.18 +1.0
4,064,552 - PFLU_RS17905 0.18 +0.2
4,064,658 + PFLU_RS17905 0.28 -1.4
4,064,659 - PFLU_RS17905 0.28 -0.3
4,064,659 - PFLU_RS17905 0.28 +1.7
4,064,962 + PFLU_RS17905 0.54 +0.7
4,064,962 + PFLU_RS17905 0.54 -0.2
4,065,093 + PFLU_RS17905 0.66 -0.0
4,065,162 + PFLU_RS17905 0.72 -0.1
4,065,163 - PFLU_RS17905 0.72 -0.4
4,065,171 + PFLU_RS17905 0.72 -2.1
4,065,172 - PFLU_RS17905 0.72 +1.2
4,065,172 - PFLU_RS17905 0.72 +0.5
4,065,475 + -0.8
4,065,476 - -1.6
4,065,476 - +0.7
4,065,476 - +0.5
4,065,479 + -2.6
4,065,479 + -1.5
4,065,480 - +2.6
4,065,677 - PFLU_RS17910 0.12 +1.4
4,065,677 - PFLU_RS17910 0.12 +0.9
4,065,786 + PFLU_RS17910 0.20 -1.8
4,065,902 - PFLU_RS17910 0.29 +0.3
4,065,979 + PFLU_RS17910 0.35 +0.2
4,065,979 + PFLU_RS17910 0.35 +1.1
4,065,980 - PFLU_RS17910 0.35 -0.2
4,066,053 - PFLU_RS17910 0.40 +0.3
4,066,117 + PFLU_RS17910 0.45 +1.4
4,066,117 + PFLU_RS17910 0.45 -0.8
4,066,117 + PFLU_RS17910 0.45 -0.8
4,066,117 + PFLU_RS17910 0.45 -0.8
4,066,117 + PFLU_RS17910 0.45 +1.0
4,066,117 + PFLU_RS17910 0.45 +2.0
4,066,117 + PFLU_RS17910 0.45 -0.0
4,066,117 + PFLU_RS17910 0.45 -0.8
4,066,118 - PFLU_RS17910 0.45 -0.8
4,066,118 - PFLU_RS17910 0.45 +0.8
4,066,118 - PFLU_RS17910 0.45 -0.0
4,066,118 - PFLU_RS17910 0.45 +1.9
4,066,118 - PFLU_RS17910 0.45 +0.3
4,066,118 - PFLU_RS17910 0.45 +0.8
4,066,118 - PFLU_RS17910 0.45 +1.0
4,066,186 + PFLU_RS17910 0.50 +0.8
4,066,186 + PFLU_RS17910 0.50 +1.9
4,066,187 - PFLU_RS17910 0.50 -1.8
4,066,264 + PFLU_RS17910 0.56 +1.4
4,066,264 + PFLU_RS17910 0.56 -0.8
4,066,264 + PFLU_RS17910 0.56 -0.2
4,066,264 + PFLU_RS17910 0.56 +1.0
4,066,264 + PFLU_RS17910 0.56 -2.6
4,066,264 + PFLU_RS17910 0.56 -0.4
4,066,264 + PFLU_RS17910 0.56 +0.8
4,066,264 + PFLU_RS17910 0.56 -0.4
4,066,265 - PFLU_RS17910 0.56 +0.5
4,066,265 - PFLU_RS17910 0.56 +1.3
4,066,265 - PFLU_RS17910 0.56 +0.1
4,066,265 - PFLU_RS17910 0.56 +1.0
4,066,265 - PFLU_RS17910 0.56 +0.0
4,066,265 - PFLU_RS17910 0.56 +2.8
4,066,284 - PFLU_RS17910 0.58 +0.8
4,066,289 + PFLU_RS17910 0.58 -0.4
4,066,366 + PFLU_RS17910 0.64 +0.9
4,066,366 + PFLU_RS17910 0.64 +1.1
4,066,367 - PFLU_RS17910 0.64 +0.8
4,066,367 - PFLU_RS17910 0.64 -0.5
4,066,387 + PFLU_RS17910 0.66 -1.8
4,066,388 - PFLU_RS17910 0.66 +0.3
4,066,388 - PFLU_RS17910 0.66 -0.8

Or see this region's nucleotide sequence