Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS09540

Experiment: R2A with Manganese (II) chloride tetrahydrate 0.625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Manganese (II) chloride tetrahydrate 0.625 mM
2,097,092	+		LRK54_RS09535	0.33	-0.8
2,097,092	+		LRK54_RS09535	0.33	+0.4
2,097,092	+		LRK54_RS09535	0.33	+0.1
2,097,092	+		LRK54_RS09535	0.33	-0.1
2,097,092	+		LRK54_RS09535	0.33	-0.1
2,097,092	+		LRK54_RS09535	0.33	-0.6
2,097,092	+		LRK54_RS09535	0.33	+0.9
2,097,092	+		LRK54_RS09535	0.33	+0.4
2,097,092	+		LRK54_RS09535	0.33	+0.1
2,097,093	-		LRK54_RS09535	0.33	-0.1
2,097,093	-		LRK54_RS09535	0.33	-0.5
2,097,093	-		LRK54_RS09535	0.33	-0.8
2,097,093	-		LRK54_RS09535	0.33	+0.3
2,097,093	-		LRK54_RS09535	0.33	-0.1
2,097,093	-		LRK54_RS09535	0.33	-0.4
2,097,093	-		LRK54_RS09535	0.33	-1.0
2,097,219	-		LRK54_RS09535	0.42	-0.2
2,097,293	+		LRK54_RS09535	0.47	+0.1
2,097,294	-		LRK54_RS09535	0.47	+0.1
2,097,365	+		LRK54_RS09535	0.52	-1.3
2,097,365	+		LRK54_RS09535	0.52	-0.5
2,097,365	+		LRK54_RS09535	0.52	-0.6
2,097,366	-		LRK54_RS09535	0.52	-0.6
2,097,366	-		LRK54_RS09535	0.52	-1.3
2,097,480	+		LRK54_RS09535	0.60	+0.1
2,097,480	+		LRK54_RS09535	0.60	-0.1
2,097,481	-		LRK54_RS09535	0.60	-0.3
2,097,481	-		LRK54_RS09535	0.60	-0.0
2,097,481	-		LRK54_RS09535	0.60	-0.7
2,097,481	-		LRK54_RS09535	0.60	-0.4
2,097,481	-		LRK54_RS09535	0.60	-0.0
2,097,481	-		LRK54_RS09535	0.60	-0.4
2,097,521	+		LRK54_RS09535	0.63	-0.2
2,097,548	+		LRK54_RS09535	0.65	-0.8
2,097,548	+		LRK54_RS09535	0.65	-1.3
2,097,548	+		LRK54_RS09535	0.65	-1.3
2,097,548	+		LRK54_RS09535	0.65	-0.6
2,097,548	+		LRK54_RS09535	0.65	+0.5
2,097,549	-		LRK54_RS09535	0.65	-0.9
2,097,549	-		LRK54_RS09535	0.65	-0.3
2,097,549	-		LRK54_RS09535	0.65	+1.3
2,097,549	-		LRK54_RS09535	0.65	-2.4
2,097,569	-		LRK54_RS09535	0.66	-0.4
2,097,623	+		LRK54_RS09535	0.70	-0.2
2,097,674	+		LRK54_RS09535	0.74	+0.2
2,097,674	+		LRK54_RS09535	0.74	+0.4
2,097,674	+		LRK54_RS09535	0.74	+2.0
2,097,674	+		LRK54_RS09535	0.74	-0.1
2,097,675	-		LRK54_RS09535	0.74	-0.4
2,097,677	+		LRK54_RS09535	0.74	+0.3
2,097,678	-		LRK54_RS09535	0.74	-0.1
2,097,678	-		LRK54_RS09535	0.74	-0.6
2,097,678	-		LRK54_RS09535	0.74	+0.4
2,097,678	-		LRK54_RS09535	0.74	-0.4
2,097,678	-		LRK54_RS09535	0.74	-0.7
2,097,687	+		LRK54_RS09535	0.74	-1.4
2,097,687	+		LRK54_RS09535	0.74	-1.1
2,097,687	+		LRK54_RS09535	0.74	-1.7
2,097,688	-		LRK54_RS09535	0.75	+0.1
2,097,688	-		LRK54_RS09535	0.75	-1.1
2,097,688	-		LRK54_RS09535	0.75	+0.3
2,097,689	+		LRK54_RS09535	0.75	-1.1
2,097,689	+		LRK54_RS09535	0.75	+0.2
2,097,689	+		LRK54_RS09535	0.75	-0.5
2,097,689	+		LRK54_RS09535	0.75	+0.2
2,097,689	+		LRK54_RS09535	0.75	-0.2
2,097,689	+		LRK54_RS09535	0.75	-0.6
2,097,689	+		LRK54_RS09535	0.75	-0.8
2,097,689	+		LRK54_RS09535	0.75	-0.0
2,097,689	+		LRK54_RS09535	0.75	+0.5
2,097,689	+		LRK54_RS09535	0.75	-0.9
2,097,689	+		LRK54_RS09535	0.75	+0.3
2,097,689	+		LRK54_RS09535	0.75	-1.3
2,097,690	-		LRK54_RS09535	0.75	-0.1
2,097,690	-		LRK54_RS09535	0.75	-0.3
2,097,690	-		LRK54_RS09535	0.75	-0.2
2,097,690	-		LRK54_RS09535	0.75	+0.5
2,097,690	-		LRK54_RS09535	0.75	-0.2
2,097,690	-		LRK54_RS09535	0.75	-0.0
2,097,794	+		LRK54_RS09535	0.82	-1.1
2,097,794	+		LRK54_RS09535	0.82	+0.4
2,097,794	+		LRK54_RS09535	0.82	+0.2
2,097,794	+		LRK54_RS09535	0.82	+1.0
2,097,794	+		LRK54_RS09535	0.82	-0.6
2,097,794	+		LRK54_RS09535	0.82	+0.1
2,097,795	-		LRK54_RS09535	0.82	+0.2
2,097,795	-		LRK54_RS09535	0.82	-2.0
2,097,838	+		LRK54_RS09535	0.85	-0.3
2,097,838	+		LRK54_RS09535	0.85	+1.7
2,097,838	+		LRK54_RS09535	0.85	-0.6
2,097,838	+		LRK54_RS09535	0.85	-0.3
2,097,839	-		LRK54_RS09535	0.85	-0.9
2,097,849	+		LRK54_RS09535	0.86	-0.2
2,097,849	+		LRK54_RS09535	0.86	-0.7
2,097,849	+		LRK54_RS09535	0.86	-0.3
2,097,850	-		LRK54_RS09535	0.86	-0.3
2,097,887	+		LRK54_RS09535	0.88	+0.4
2,097,887	+		LRK54_RS09535	0.88	-0.4
2,097,888	-		LRK54_RS09535	0.89	-0.7
2,097,888	-		LRK54_RS09535	0.89	-0.6
2,097,921	+				+0.4
2,097,921	+				+0.2
2,097,922	-				-0.2
2,098,152	+		LRK54_RS09540	0.27	+0.4
2,098,153	-		LRK54_RS09540	0.27	-0.8
2,098,153	-		LRK54_RS09540	0.27	-1.8
2,098,155	+		LRK54_RS09540	0.28	+0.1
2,098,155	+		LRK54_RS09540	0.28	-0.4
2,098,155	+		LRK54_RS09540	0.28	-0.3
2,098,156	-		LRK54_RS09540	0.28	+0.1
2,098,156	-		LRK54_RS09540	0.28	-0.4
2,098,156	-		LRK54_RS09540	0.28	-0.5
2,098,156	-		LRK54_RS09540	0.28	-0.7
2,098,156	-		LRK54_RS09540	0.28	-0.8
2,098,156	-		LRK54_RS09540	0.28	-0.0
2,098,203	+		LRK54_RS09540	0.45	+0.2
2,098,203	+		LRK54_RS09540	0.45	+0.2
2,098,203	+		LRK54_RS09540	0.45	-0.3
2,098,203	+		LRK54_RS09540	0.45	-1.8
2,098,204	-		LRK54_RS09540	0.45	-0.3
2,098,204	-		LRK54_RS09540	0.45	+0.5
2,098,204	-		LRK54_RS09540	0.45	-0.5
2,098,204	-		LRK54_RS09540	0.45	-0.6
2,098,287	+		LRK54_RS09540	0.75	+0.2
2,098,287	+		LRK54_RS09540	0.75	-1.0
2,098,287	+		LRK54_RS09540	0.75	-0.1
2,098,287	+		LRK54_RS09540	0.75	-0.3
2,098,287	+		LRK54_RS09540	0.75	-0.5
2,098,287	+		LRK54_RS09540	0.75	-0.5
2,098,287	+		LRK54_RS09540	0.75	-0.3
2,098,287	+		LRK54_RS09540	0.75	+0.4
2,098,287	+		LRK54_RS09540	0.75	+0.2
2,098,288	-		LRK54_RS09540	0.75	-0.1
2,098,288	-		LRK54_RS09540	0.75	+0.2
2,098,288	-		LRK54_RS09540	0.75	-0.6
2,098,312	+		LRK54_RS09540	0.84	+0.3
2,098,313	-		LRK54_RS09540	0.84	+0.1
2,098,313	-		LRK54_RS09540	0.84	-2.0
2,098,313	-		LRK54_RS09540	0.84	-0.2
2,098,313	-		LRK54_RS09540	0.84	-0.3
2,098,417	+				-0.4
2,098,417	+				-1.0
2,098,417	+				-0.3
2,098,417	+				-1.0
2,098,417	+				+0.9
2,098,417	+				+1.3
2,098,417	+				-0.5
2,098,417	+				-0.3
2,098,417	+				-0.1
2,098,417	+				+0.3
2,098,417	+				+0.2
2,098,417	+				+0.3
2,098,417	+				-0.8
2,098,418	-				+0.7
2,098,418	-				-1.3
2,098,418	-				-0.4
2,098,418	-				-0.5
2,098,418	-				-0.6
2,098,418	-				-0.6
2,098,418	-				-0.0
2,098,418	-				-0.6
2,098,418	-				+0.3
2,098,418	-				-1.1
2,098,418	-				-0.2
2,098,418	-				+0.3
2,098,418	-				+0.6
2,098,418	-				+0.9
2,098,457	+				-0.0
2,098,457	+				-1.5
2,098,457	+				-0.1
2,098,457	+				-0.1
2,098,457	+				-0.5
2,098,458	-				+2.0
2,098,458	-				-0.8
2,098,458	-				-0.3
2,098,458	-				+0.8
2,098,458	-				-0.6
2,098,517	-				-1.4
2,098,517	-				-0.6
2,098,534	+				-0.1
2,098,534	+				-0.8
2,098,535	-				-0.2
2,098,585	+				-0.8
2,098,585	+				+0.1
2,098,585	+				+0.0
2,098,585	+				-0.3
2,098,585	+				-0.3
2,098,586	-				+0.3
2,098,586	-				-0.1
2,098,586	-				-0.3
2,098,586	-				+0.3
2,098,646	+				-0.5
2,098,646	+				-0.0
2,098,646	+				+0.1
2,098,647	-				-0.4
2,098,647	-				-0.4
2,098,647	-				-0.2
2,098,647	-				-0.1
2,098,760	+		LRK54_RS09545	0.18	+0.1
2,098,760	+		LRK54_RS09545	0.18	-0.1
2,098,761	-		LRK54_RS09545	0.19	-0.3
2,098,761	-		LRK54_RS09545	0.19	-0.3
2,098,761	-		LRK54_RS09545	0.19	-1.7
2,098,761	-		LRK54_RS09545	0.19	-0.3
2,098,761	-		LRK54_RS09545	0.19	-0.0
2,098,965	+		LRK54_RS09545	0.63	+0.2
2,098,965	+		LRK54_RS09545	0.63	+0.2
2,098,965	+		LRK54_RS09545	0.63	+0.2
2,098,965	+		LRK54_RS09545	0.63	-0.8
2,098,965	+		LRK54_RS09545	0.63	-0.7
2,098,965	+		LRK54_RS09545	0.63	-0.4
2,098,965	+		LRK54_RS09545	0.63	+0.0
2,098,965	+		LRK54_RS09545	0.63	-0.0
2,098,965	+		LRK54_RS09545	0.63	-0.7
2,098,965	+		LRK54_RS09545	0.63	+0.3
2,098,965	+		LRK54_RS09545	0.63	-0.2
2,098,965	+		LRK54_RS09545	0.63	+1.2
2,098,966	-		LRK54_RS09545	0.63	-0.7
2,098,966	-		LRK54_RS09545	0.63	-0.1
2,099,219	+				+0.4
2,099,219	+				-1.3
2,099,219	+				+0.7
2,099,219	+				+0.1
2,099,219	+				-0.3
2,099,219	+				-0.0
2,099,219	+				+0.8
2,099,219	+				-0.6
2,099,219	+				-0.7
2,099,219	+				-0.0
2,099,219	+				-0.4
2,099,219	+				-0.2
2,099,220	-				+0.4
2,099,220	-				-0.8
2,099,220	-				+0.3
2,099,220	-				-1.4
2,099,220	-				+0.7
2,099,220	-				-0.2
2,099,220	-				-0.4
2,099,220	-				+0.3
2,099,279	-				-0.3