Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS18485

Experiment: Dextran 5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS18490 and HMPREF1058_RS18485 are separated by 118 nucleotidesHMPREF1058_RS18485 and HMPREF1058_RS18480 are separated by 10 nucleotides HMPREF1058_RS18490: HMPREF1058_RS18490 - acyltransferase family protein, at 141,276 to 142,361 _RS18490 HMPREF1058_RS18485: HMPREF1058_RS18485 - UDP-glucose/GDP-mannose dehydrogenase family protein, at 142,480 to 143,829 _RS18485 HMPREF1058_RS18480: HMPREF1058_RS18480 - NAD-dependent epimerase, at 143,840 to 144,877 _RS18480 Position (kb) 142 143 144Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 141.513 kb on + strand, within HMPREF1058_RS18490at 141.531 kb on - strand, within HMPREF1058_RS18490at 141.532 kb on + strand, within HMPREF1058_RS18490at 141.532 kb on + strand, within HMPREF1058_RS18490at 141.532 kb on + strand, within HMPREF1058_RS18490at 141.533 kb on - strand, within HMPREF1058_RS18490at 141.533 kb on - strand, within HMPREF1058_RS18490at 141.570 kb on + strand, within HMPREF1058_RS18490at 141.570 kb on + strand, within HMPREF1058_RS18490at 141.576 kb on + strand, within HMPREF1058_RS18490at 141.577 kb on - strand, within HMPREF1058_RS18490at 141.577 kb on - strand, within HMPREF1058_RS18490at 141.577 kb on - strand, within HMPREF1058_RS18490at 141.581 kb on + strand, within HMPREF1058_RS18490at 141.583 kb on + strand, within HMPREF1058_RS18490at 141.584 kb on - strand, within HMPREF1058_RS18490at 141.585 kb on + strand, within HMPREF1058_RS18490at 141.614 kb on - strand, within HMPREF1058_RS18490at 141.618 kb on + strand, within HMPREF1058_RS18490at 141.631 kb on - strand, within HMPREF1058_RS18490at 141.633 kb on + strand, within HMPREF1058_RS18490at 141.704 kb on + strand, within HMPREF1058_RS18490at 141.706 kb on + strand, within HMPREF1058_RS18490at 141.753 kb on - strand, within HMPREF1058_RS18490at 141.757 kb on - strand, within HMPREF1058_RS18490at 141.792 kb on + strand, within HMPREF1058_RS18490at 141.793 kb on - strand, within HMPREF1058_RS18490at 141.824 kb on + strand, within HMPREF1058_RS18490at 141.829 kb on + strand, within HMPREF1058_RS18490at 141.834 kb on - strand, within HMPREF1058_RS18490at 141.842 kb on - strand, within HMPREF1058_RS18490at 141.901 kb on + strand, within HMPREF1058_RS18490at 141.906 kb on + strand, within HMPREF1058_RS18490at 141.906 kb on + strand, within HMPREF1058_RS18490at 141.907 kb on - strand, within HMPREF1058_RS18490at 141.907 kb on - strand, within HMPREF1058_RS18490at 141.907 kb on - strand, within HMPREF1058_RS18490at 141.907 kb on - strand, within HMPREF1058_RS18490at 141.962 kb on - strand, within HMPREF1058_RS18490at 142.008 kb on + strand, within HMPREF1058_RS18490at 142.151 kb on + strand, within HMPREF1058_RS18490at 142.175 kb on + strand, within HMPREF1058_RS18490at 142.175 kb on + strand, within HMPREF1058_RS18490at 142.176 kb on - strand, within HMPREF1058_RS18490at 142.176 kb on - strand, within HMPREF1058_RS18490at 142.195 kb on - strand, within HMPREF1058_RS18490at 142.209 kb on + strand, within HMPREF1058_RS18490at 142.218 kb on + strand, within HMPREF1058_RS18490at 142.219 kb on - strand, within HMPREF1058_RS18490at 142.262 kb on + strandat 142.272 kb on + strandat 142.281 kb on - strandat 142.290 kb on + strandat 142.291 kb on - strandat 142.377 kb on + strandat 142.512 kb on - strandat 142.535 kb on + strandat 142.697 kb on + strand, within HMPREF1058_RS18485at 142.698 kb on - strand, within HMPREF1058_RS18485at 142.780 kb on - strand, within HMPREF1058_RS18485at 142.833 kb on + strand, within HMPREF1058_RS18485at 142.833 kb on + strand, within HMPREF1058_RS18485at 143.096 kb on - strand, within HMPREF1058_RS18485at 143.112 kb on + strand, within HMPREF1058_RS18485at 143.191 kb on - strand, within HMPREF1058_RS18485at 143.267 kb on + strand, within HMPREF1058_RS18485at 143.267 kb on + strand, within HMPREF1058_RS18485at 143.537 kb on + strand, within HMPREF1058_RS18485at 143.620 kb on + strand, within HMPREF1058_RS18485at 143.629 kb on - strand, within HMPREF1058_RS18485at 143.691 kb on - strand, within HMPREF1058_RS18485at 143.691 kb on - strand, within HMPREF1058_RS18485at 143.753 kb on - strandat 143.821 kb on + strandat 143.821 kb on + strandat 143.821 kb on + strandat 143.822 kb on - strandat 143.918 kb on - strandat 143.918 kb on - strandat 143.993 kb on + strand, within HMPREF1058_RS18480at 144.071 kb on + strand, within HMPREF1058_RS18480at 144.071 kb on + strand, within HMPREF1058_RS18480at 144.071 kb on + strand, within HMPREF1058_RS18480at 144.072 kb on - strand, within HMPREF1058_RS18480at 144.078 kb on + strand, within HMPREF1058_RS18480at 144.080 kb on + strand, within HMPREF1058_RS18480at 144.085 kb on + strand, within HMPREF1058_RS18480at 144.166 kb on + strand, within HMPREF1058_RS18480at 144.167 kb on - strand, within HMPREF1058_RS18480at 144.210 kb on - strand, within HMPREF1058_RS18480at 144.210 kb on - strand, within HMPREF1058_RS18480at 144.280 kb on - strand, within HMPREF1058_RS18480at 144.280 kb on - strand, within HMPREF1058_RS18480at 144.287 kb on - strand, within HMPREF1058_RS18480at 144.531 kb on + strand, within HMPREF1058_RS18480at 144.532 kb on - strand, within HMPREF1058_RS18480at 144.680 kb on - strand, within HMPREF1058_RS18480at 144.772 kb on - strand, within HMPREF1058_RS18480at 144.826 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dextran 5 mg/ml (C)
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141,513 + HMPREF1058_RS18490 0.22 -1.6
141,531 - HMPREF1058_RS18490 0.23 +0.5
141,532 + HMPREF1058_RS18490 0.24 -0.2
141,532 + HMPREF1058_RS18490 0.24 -2.6
141,532 + HMPREF1058_RS18490 0.24 +0.1
141,533 - HMPREF1058_RS18490 0.24 -0.8
141,533 - HMPREF1058_RS18490 0.24 +0.4
141,570 + HMPREF1058_RS18490 0.27 +0.6
141,570 + HMPREF1058_RS18490 0.27 +1.4
141,576 + HMPREF1058_RS18490 0.28 -0.7
141,577 - HMPREF1058_RS18490 0.28 +0.3
141,577 - HMPREF1058_RS18490 0.28 -1.1
141,577 - HMPREF1058_RS18490 0.28 +1.4
141,581 + HMPREF1058_RS18490 0.28 +0.2
141,583 + HMPREF1058_RS18490 0.28 -2.0
141,584 - HMPREF1058_RS18490 0.28 +0.4
141,585 + HMPREF1058_RS18490 0.28 -1.1
141,614 - HMPREF1058_RS18490 0.31 -4.3
141,618 + HMPREF1058_RS18490 0.31 +0.8
141,631 - HMPREF1058_RS18490 0.33 +0.9
141,633 + HMPREF1058_RS18490 0.33 -1.8
141,704 + HMPREF1058_RS18490 0.39 -1.1
141,706 + HMPREF1058_RS18490 0.40 +1.0
141,753 - HMPREF1058_RS18490 0.44 -0.6
141,757 - HMPREF1058_RS18490 0.44 +2.0
141,792 + HMPREF1058_RS18490 0.48 +0.7
141,793 - HMPREF1058_RS18490 0.48 +0.9
141,824 + HMPREF1058_RS18490 0.50 -0.8
141,829 + HMPREF1058_RS18490 0.51 +1.1
141,834 - HMPREF1058_RS18490 0.51 -0.5
141,842 - HMPREF1058_RS18490 0.52 +0.1
141,901 + HMPREF1058_RS18490 0.58 -0.1
141,906 + HMPREF1058_RS18490 0.58 -1.7
141,906 + HMPREF1058_RS18490 0.58 +0.4
141,907 - HMPREF1058_RS18490 0.58 -1.5
141,907 - HMPREF1058_RS18490 0.58 +0.3
141,907 - HMPREF1058_RS18490 0.58 +0.1
141,907 - HMPREF1058_RS18490 0.58 +0.5
141,962 - HMPREF1058_RS18490 0.63 -0.8
142,008 + HMPREF1058_RS18490 0.67 +0.6
142,151 + HMPREF1058_RS18490 0.81 -0.7
142,175 + HMPREF1058_RS18490 0.83 +0.0
142,175 + HMPREF1058_RS18490 0.83 -0.4
142,176 - HMPREF1058_RS18490 0.83 -0.7
142,176 - HMPREF1058_RS18490 0.83 -1.4
142,195 - HMPREF1058_RS18490 0.85 -0.7
142,209 + HMPREF1058_RS18490 0.86 +1.3
142,218 + HMPREF1058_RS18490 0.87 -2.2
142,219 - HMPREF1058_RS18490 0.87 +0.6
142,262 + -0.0
142,272 + +0.3
142,281 - +0.3
142,290 + -0.4
142,291 - -2.2
142,377 + +0.4
142,512 - +3.7
142,535 + -3.0
142,697 + HMPREF1058_RS18485 0.16 -1.6
142,698 - HMPREF1058_RS18485 0.16 +0.3
142,780 - HMPREF1058_RS18485 0.22 +1.3
142,833 + HMPREF1058_RS18485 0.26 -1.4
142,833 + HMPREF1058_RS18485 0.26 -1.6
143,096 - HMPREF1058_RS18485 0.46 -0.4
143,112 + HMPREF1058_RS18485 0.47 +0.8
143,191 - HMPREF1058_RS18485 0.53 -1.8
143,267 + HMPREF1058_RS18485 0.58 -3.0
143,267 + HMPREF1058_RS18485 0.58 -0.3
143,537 + HMPREF1058_RS18485 0.78 -1.5
143,620 + HMPREF1058_RS18485 0.84 +0.7
143,629 - HMPREF1058_RS18485 0.85 -0.9
143,691 - HMPREF1058_RS18485 0.90 +0.3
143,691 - HMPREF1058_RS18485 0.90 -0.6
143,753 - +1.0
143,821 + +0.6
143,821 + -1.3
143,821 + -2.5
143,822 - -1.9
143,918 - +0.5
143,918 - -0.7
143,993 + HMPREF1058_RS18480 0.15 +1.1
144,071 + HMPREF1058_RS18480 0.22 -0.5
144,071 + HMPREF1058_RS18480 0.22 +0.4
144,071 + HMPREF1058_RS18480 0.22 +0.9
144,072 - HMPREF1058_RS18480 0.22 +1.0
144,078 + HMPREF1058_RS18480 0.23 -0.5
144,080 + HMPREF1058_RS18480 0.23 +1.7
144,085 + HMPREF1058_RS18480 0.24 -1.5
144,166 + HMPREF1058_RS18480 0.31 -1.1
144,167 - HMPREF1058_RS18480 0.32 +2.5
144,210 - HMPREF1058_RS18480 0.36 +2.2
144,210 - HMPREF1058_RS18480 0.36 -2.1
144,280 - HMPREF1058_RS18480 0.42 -0.1
144,280 - HMPREF1058_RS18480 0.42 -0.4
144,287 - HMPREF1058_RS18480 0.43 -2.7
144,531 + HMPREF1058_RS18480 0.67 -2.1
144,532 - HMPREF1058_RS18480 0.67 +0.2
144,680 - HMPREF1058_RS18480 0.81 -0.5
144,772 - HMPREF1058_RS18480 0.90 +2.7
144,826 - +1.4

Or see this region's nucleotide sequence