Experiment: Dextran 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10115 and HMPREF1058_RS10110 are separated by 1 nucleotides HMPREF1058_RS10110 and HMPREF1058_RS10105 are separated by 172 nucleotides HMPREF1058_RS10105 and HMPREF1058_RS10100 are separated by 32 nucleotides HMPREF1058_RS10100 and HMPREF1058_RS10095 overlap by 1 nucleotides HMPREF1058_RS10095 and HMPREF1058_RS10090 are separated by 391 nucleotides
HMPREF1058_RS10115: HMPREF1058_RS10115 - helix-turn-helix transcriptional regulator, at 721,250 to 721,801
_RS10115
HMPREF1058_RS10110: HMPREF1058_RS10110 - hypothetical protein, at 721,803 to 722,048
_RS10110
HMPREF1058_RS10105: HMPREF1058_RS10105 - helix-turn-helix transcriptional regulator, at 722,221 to 722,703
_RS10105
HMPREF1058_RS10100: HMPREF1058_RS10100 - hypothetical protein, at 722,736 to 722,948
_RS10100
HMPREF1058_RS10095: HMPREF1058_RS10095 - hypothetical protein, at 722,948 to 723,205
_RS10095
HMPREF1058_RS10090: HMPREF1058_RS10090 - phage integrase SAM-like domain-containing protein, at 723,597 to 724,940
_RS10090
Position (kb) 722
723 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 721.429 kb on + strand, within HMPREF1058_RS10115 at 721.557 kb on + strand, within HMPREF1058_RS10115 at 721.559 kb on + strand, within HMPREF1058_RS10115 at 721.656 kb on + strand, within HMPREF1058_RS10115 at 721.656 kb on + strand, within HMPREF1058_RS10115 at 721.723 kb on + strand, within HMPREF1058_RS10115 at 721.759 kb on + strand at 721.979 kb on + strand, within HMPREF1058_RS10110 at 722.012 kb on + strand, within HMPREF1058_RS10110 at 722.073 kb on + strand at 722.075 kb on + strand at 722.091 kb on + strand at 722.103 kb on + strand at 722.103 kb on + strand at 722.704 kb on + strand at 722.747 kb on + strand at 722.792 kb on + strand, within HMPREF1058_RS10100 at 722.792 kb on + strand, within HMPREF1058_RS10100 at 722.815 kb on + strand, within HMPREF1058_RS10100 at 722.849 kb on + strand, within HMPREF1058_RS10100 at 723.204 kb on - strand at 723.257 kb on + strand at 723.258 kb on - strand at 723.258 kb on - strand at 723.258 kb on - strand at 723.259 kb on + strand at 723.259 kb on + strand at 723.259 kb on + strand at 723.259 kb on + strand at 723.259 kb on + strand at 723.260 kb on - strand at 723.260 kb on - strand at 723.261 kb on + strand at 723.262 kb on - strand at 723.262 kb on - strand at 723.262 kb on - strand at 723.277 kb on + strand at 723.278 kb on - strand at 723.278 kb on - strand at 723.279 kb on + strand at 723.279 kb on + strand at 723.279 kb on + strand at 723.288 kb on + strand at 723.288 kb on + strand at 723.291 kb on + strand at 723.291 kb on + strand at 723.299 kb on + strand at 723.300 kb on - strand at 723.300 kb on - strand at 723.301 kb on + strand at 723.301 kb on + strand at 723.301 kb on + strand at 723.302 kb on - strand at 723.303 kb on + strand at 723.303 kb on + strand at 723.303 kb on + strand at 723.304 kb on - strand at 723.304 kb on - strand at 723.306 kb on - strand at 723.428 kb on - strand at 723.578 kb on + strand at 723.614 kb on + strand at 723.645 kb on + strand at 723.681 kb on - strand at 723.681 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dextran 5 mg/ml (C) remove 721,429 + HMPREF1058_RS10115 0.32 +1.4 721,557 + HMPREF1058_RS10115 0.56 +0.7 721,559 + HMPREF1058_RS10115 0.56 -1.5 721,656 + HMPREF1058_RS10115 0.74 +0.1 721,656 + HMPREF1058_RS10115 0.74 -0.4 721,723 + HMPREF1058_RS10115 0.86 -2.1 721,759 + -0.2 721,979 + HMPREF1058_RS10110 0.72 -0.3 722,012 + HMPREF1058_RS10110 0.85 -0.4 722,073 + -0.3 722,075 + +1.2 722,091 + -1.1 722,103 + +0.6 722,103 + +2.7 722,704 + -2.9 722,747 + -2.1 722,792 + HMPREF1058_RS10100 0.26 +2.1 722,792 + HMPREF1058_RS10100 0.26 +0.5 722,815 + HMPREF1058_RS10100 0.37 +0.8 722,849 + HMPREF1058_RS10100 0.53 -0.2 723,204 - +0.3 723,257 + +0.1 723,258 - +0.4 723,258 - +1.2 723,258 - -1.0 723,259 + +0.6 723,259 + -0.2 723,259 + +0.3 723,259 + +0.3 723,259 + -0.4 723,260 - -0.5 723,260 - -3.0 723,261 + -1.9 723,262 - -0.2 723,262 - -4.7 723,262 - +1.2 723,277 + +0.4 723,278 - -0.4 723,278 - -0.3 723,279 + +0.7 723,279 + -1.6 723,279 + +0.5 723,288 + -0.9 723,288 + -0.2 723,291 + -0.1 723,291 + +0.0 723,299 + +0.6 723,300 - -2.4 723,300 - -1.2 723,301 + +0.2 723,301 + +0.5 723,301 + -0.2 723,302 - -0.8 723,303 + +0.6 723,303 + -0.9 723,303 + +0.9 723,304 - -1.6 723,304 - -0.9 723,306 - -1.1 723,428 - -2.7 723,578 + +0.3 723,614 + -1.1 723,645 + -1.4 723,681 - -1.4 723,681 - +0.5
Or see this region's nucleotide sequence