Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS05700

Experiment: Dextran 5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS05705 and HMPREF1058_RS05700 are separated by 35 nucleotidesHMPREF1058_RS05700 and HMPREF1058_RS0119830 are separated by 35 nucleotidesHMPREF1058_RS0119830 and HMPREF1058_RS21490 are separated by 172 nucleotides HMPREF1058_RS05705: HMPREF1058_RS05705 - DGQHR domain-containing protein, at 97,814 to 100,150 _RS05705 HMPREF1058_RS05700: HMPREF1058_RS05700 - Dam family site-specific DNA-(adenine-N6)-methyltransferase, at 100,186 to 101,091 _RS05700 HMPREF1058_RS0119830: HMPREF1058_RS0119830 - helix-turn-helix transcriptional regulator, at 101,127 to 101,366 _RS0119830 HMPREF1058_RS21490: HMPREF1058_RS21490 - hypothetical protein, at 101,539 to 101,682 _RS21490 Position (kb) 100 101 102Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 99.258 kb on + strand, within HMPREF1058_RS05705at 99.288 kb on - strand, within HMPREF1058_RS05705at 99.289 kb on + strand, within HMPREF1058_RS05705at 99.324 kb on + strand, within HMPREF1058_RS05705at 99.325 kb on - strand, within HMPREF1058_RS05705at 99.325 kb on - strand, within HMPREF1058_RS05705at 99.325 kb on - strand, within HMPREF1058_RS05705at 99.346 kb on + strand, within HMPREF1058_RS05705at 99.347 kb on - strand, within HMPREF1058_RS05705at 99.347 kb on - strand, within HMPREF1058_RS05705at 99.382 kb on + strand, within HMPREF1058_RS05705at 99.403 kb on + strand, within HMPREF1058_RS05705at 99.403 kb on + strand, within HMPREF1058_RS05705at 99.403 kb on + strand, within HMPREF1058_RS05705at 99.404 kb on - strand, within HMPREF1058_RS05705at 99.407 kb on + strand, within HMPREF1058_RS05705at 99.408 kb on - strand, within HMPREF1058_RS05705at 99.412 kb on + strand, within HMPREF1058_RS05705at 99.412 kb on + strand, within HMPREF1058_RS05705at 99.412 kb on + strand, within HMPREF1058_RS05705at 99.413 kb on - strand, within HMPREF1058_RS05705at 99.413 kb on - strand, within HMPREF1058_RS05705at 99.413 kb on - strand, within HMPREF1058_RS05705at 99.414 kb on + strand, within HMPREF1058_RS05705at 99.414 kb on + strand, within HMPREF1058_RS05705at 99.415 kb on - strand, within HMPREF1058_RS05705at 99.417 kb on + strand, within HMPREF1058_RS05705at 99.422 kb on - strand, within HMPREF1058_RS05705at 99.422 kb on - strand, within HMPREF1058_RS05705at 99.443 kb on + strand, within HMPREF1058_RS05705at 99.463 kb on + strand, within HMPREF1058_RS05705at 99.464 kb on - strand, within HMPREF1058_RS05705at 99.514 kb on + strand, within HMPREF1058_RS05705at 99.529 kb on - strand, within HMPREF1058_RS05705at 99.529 kb on - strand, within HMPREF1058_RS05705at 99.539 kb on - strand, within HMPREF1058_RS05705at 99.548 kb on + strand, within HMPREF1058_RS05705at 99.553 kb on - strand, within HMPREF1058_RS05705at 99.558 kb on + strand, within HMPREF1058_RS05705at 99.558 kb on + strand, within HMPREF1058_RS05705at 99.558 kb on + strand, within HMPREF1058_RS05705at 99.559 kb on - strand, within HMPREF1058_RS05705at 99.562 kb on + strand, within HMPREF1058_RS05705at 99.562 kb on + strandat 99.563 kb on - strand, within HMPREF1058_RS05705at 99.563 kb on - strand, within HMPREF1058_RS05705at 99.563 kb on - strand, within HMPREF1058_RS05705at 99.680 kb on + strand, within HMPREF1058_RS05705at 99.681 kb on - strand, within HMPREF1058_RS05705at 99.681 kb on - strand, within HMPREF1058_RS05705at 99.714 kb on + strand, within HMPREF1058_RS05705at 99.858 kb on - strand, within HMPREF1058_RS05705at 99.877 kb on - strand, within HMPREF1058_RS05705at 99.877 kb on - strand, within HMPREF1058_RS05705at 99.919 kb on + strandat 100.007 kb on - strandat 100.020 kb on - strandat 100.037 kb on - strandat 100.046 kb on - strandat 100.150 kb on + strandat 100.150 kb on + strandat 100.151 kb on - strandat 100.153 kb on - strandat 100.153 kb on - strandat 100.153 kb on - strandat 100.154 kb on + strandat 100.155 kb on - strandat 100.177 kb on + strandat 100.178 kb on - strandat 100.227 kb on + strandat 100.288 kb on + strand, within HMPREF1058_RS05700at 100.414 kb on + strand, within HMPREF1058_RS05700at 100.414 kb on + strand, within HMPREF1058_RS05700at 100.482 kb on + strand, within HMPREF1058_RS05700at 100.521 kb on + strand, within HMPREF1058_RS05700at 100.543 kb on + strand, within HMPREF1058_RS05700at 100.572 kb on + strand, within HMPREF1058_RS05700at 100.572 kb on + strand, within HMPREF1058_RS05700at 100.607 kb on + strand, within HMPREF1058_RS05700at 100.607 kb on + strand, within HMPREF1058_RS05700at 100.641 kb on + strand, within HMPREF1058_RS05700at 100.652 kb on + strand, within HMPREF1058_RS05700at 100.654 kb on + strand, within HMPREF1058_RS05700at 100.674 kb on + strand, within HMPREF1058_RS05700at 100.677 kb on + strand, within HMPREF1058_RS05700at 100.754 kb on + strand, within HMPREF1058_RS05700at 100.790 kb on + strand, within HMPREF1058_RS05700at 100.846 kb on + strand, within HMPREF1058_RS05700at 100.853 kb on + strand, within HMPREF1058_RS05700at 100.853 kb on + strand, within HMPREF1058_RS05700at 100.910 kb on + strand, within HMPREF1058_RS05700at 100.923 kb on + strand, within HMPREF1058_RS05700at 100.962 kb on + strand, within HMPREF1058_RS05700at 101.105 kb on - strandat 101.152 kb on - strand, within HMPREF1058_RS0119830at 101.346 kb on - strandat 101.352 kb on - strandat 101.367 kb on + strandat 101.372 kb on - strandat 101.420 kb on + strandat 101.420 kb on + strandat 101.454 kb on + strandat 101.529 kb on - strandat 101.601 kb on + strand, within HMPREF1058_RS21490at 101.603 kb on + strand, within HMPREF1058_RS21490at 101.606 kb on + strand, within HMPREF1058_RS21490at 101.622 kb on + strand, within HMPREF1058_RS21490at 101.623 kb on - strand, within HMPREF1058_RS21490at 101.689 kb on + strandat 101.721 kb on - strandat 101.814 kb on + strandat 101.815 kb on - strandat 101.870 kb on + strandat 101.870 kb on + strandat 101.929 kb on + strandat 101.982 kb on + strandat 102.015 kb on - strandat 102.084 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dextran 5 mg/ml (C)
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99,258 + HMPREF1058_RS05705 0.62 +0.1
99,288 - HMPREF1058_RS05705 0.63 -2.6
99,289 + HMPREF1058_RS05705 0.63 -2.2
99,324 + HMPREF1058_RS05705 0.65 -1.3
99,325 - HMPREF1058_RS05705 0.65 -0.1
99,325 - HMPREF1058_RS05705 0.65 -0.9
99,325 - HMPREF1058_RS05705 0.65 -2.5
99,346 + HMPREF1058_RS05705 0.66 +2.1
99,347 - HMPREF1058_RS05705 0.66 +0.4
99,347 - HMPREF1058_RS05705 0.66 -0.3
99,382 + HMPREF1058_RS05705 0.67 -0.2
99,403 + HMPREF1058_RS05705 0.68 -2.2
99,403 + HMPREF1058_RS05705 0.68 -2.0
99,403 + HMPREF1058_RS05705 0.68 +1.3
99,404 - HMPREF1058_RS05705 0.68 +0.6
99,407 + HMPREF1058_RS05705 0.68 -0.9
99,408 - HMPREF1058_RS05705 0.68 +1.1
99,412 + HMPREF1058_RS05705 0.68 -3.7
99,412 + HMPREF1058_RS05705 0.68 +0.8
99,412 + HMPREF1058_RS05705 0.68 -0.9
99,413 - HMPREF1058_RS05705 0.68 +0.7
99,413 - HMPREF1058_RS05705 0.68 +0.6
99,413 - HMPREF1058_RS05705 0.68 -1.0
99,414 + HMPREF1058_RS05705 0.68 +1.3
99,414 + HMPREF1058_RS05705 0.68 -2.1
99,415 - HMPREF1058_RS05705 0.69 -1.8
99,417 + HMPREF1058_RS05705 0.69 -0.3
99,422 - HMPREF1058_RS05705 0.69 +0.1
99,422 - HMPREF1058_RS05705 0.69 +1.4
99,443 + HMPREF1058_RS05705 0.70 +0.8
99,463 + HMPREF1058_RS05705 0.71 -2.5
99,464 - HMPREF1058_RS05705 0.71 -3.4
99,514 + HMPREF1058_RS05705 0.73 -0.5
99,529 - HMPREF1058_RS05705 0.73 +0.2
99,529 - HMPREF1058_RS05705 0.73 -2.0
99,539 - HMPREF1058_RS05705 0.74 -2.9
99,548 + HMPREF1058_RS05705 0.74 -0.6
99,553 - HMPREF1058_RS05705 0.74 -0.6
99,558 + HMPREF1058_RS05705 0.75 -0.3
99,558 + HMPREF1058_RS05705 0.75 -0.2
99,558 + HMPREF1058_RS05705 0.75 +1.0
99,559 - HMPREF1058_RS05705 0.75 +0.4
99,562 + HMPREF1058_RS05705 0.75 +0.9
99,562 + +0.6
99,563 - HMPREF1058_RS05705 0.75 +1.0
99,563 - HMPREF1058_RS05705 0.75 +3.4
99,563 - HMPREF1058_RS05705 0.75 -2.7
99,680 + HMPREF1058_RS05705 0.80 -1.7
99,681 - HMPREF1058_RS05705 0.80 -2.7
99,681 - HMPREF1058_RS05705 0.80 -0.4
99,714 + HMPREF1058_RS05705 0.81 -2.6
99,858 - HMPREF1058_RS05705 0.87 +0.5
99,877 - HMPREF1058_RS05705 0.88 +0.1
99,877 - HMPREF1058_RS05705 0.88 +1.8
99,919 + -1.0
100,007 - +0.6
100,020 - -0.4
100,037 - -0.1
100,046 - -0.0
100,150 + -1.6
100,150 + -1.9
100,151 - -2.0
100,153 - +0.2
100,153 - +0.7
100,153 - -2.5
100,154 + -2.6
100,155 - -0.8
100,177 + -2.0
100,178 - +3.4
100,227 + -0.4
100,288 + HMPREF1058_RS05700 0.11 +0.4
100,414 + HMPREF1058_RS05700 0.25 -1.9
100,414 + HMPREF1058_RS05700 0.25 +0.2
100,482 + HMPREF1058_RS05700 0.33 -0.9
100,521 + HMPREF1058_RS05700 0.37 -2.2
100,543 + HMPREF1058_RS05700 0.39 -1.1
100,572 + HMPREF1058_RS05700 0.43 -1.2
100,572 + HMPREF1058_RS05700 0.43 -2.2
100,607 + HMPREF1058_RS05700 0.46 -1.4
100,607 + HMPREF1058_RS05700 0.46 -0.1
100,641 + HMPREF1058_RS05700 0.50 -0.5
100,652 + HMPREF1058_RS05700 0.51 -0.2
100,654 + HMPREF1058_RS05700 0.52 -1.3
100,674 + HMPREF1058_RS05700 0.54 +0.8
100,677 + HMPREF1058_RS05700 0.54 -2.4
100,754 + HMPREF1058_RS05700 0.63 -0.6
100,790 + HMPREF1058_RS05700 0.67 -3.6
100,846 + HMPREF1058_RS05700 0.73 +0.0
100,853 + HMPREF1058_RS05700 0.74 +0.4
100,853 + HMPREF1058_RS05700 0.74 -2.0
100,910 + HMPREF1058_RS05700 0.80 +1.2
100,923 + HMPREF1058_RS05700 0.81 -0.9
100,962 + HMPREF1058_RS05700 0.86 -1.5
101,105 - -1.4
101,152 - HMPREF1058_RS0119830 0.10 +0.1
101,346 - +0.3
101,352 - -1.4
101,367 + -3.0
101,372 - -1.4
101,420 + -0.0
101,420 + -1.4
101,454 + -0.8
101,529 - +1.7
101,601 + HMPREF1058_RS21490 0.43 -2.8
101,603 + HMPREF1058_RS21490 0.44 -0.0
101,606 + HMPREF1058_RS21490 0.47 -2.5
101,622 + HMPREF1058_RS21490 0.58 -0.4
101,623 - HMPREF1058_RS21490 0.58 +2.6
101,689 + -0.2
101,721 - -0.4
101,814 + +1.2
101,815 - +0.6
101,870 + -1.0
101,870 + +1.4
101,929 + -2.2
101,982 + -2.0
102,015 - -2.0
102,084 - +0.2

Or see this region's nucleotide sequence