Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS03410

Experiment: Dextran 5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS03415 and HMPREF1058_RS03410 are separated by 33 nucleotidesHMPREF1058_RS03410 and HMPREF1058_RS03405 are separated by 372 nucleotides HMPREF1058_RS03415: HMPREF1058_RS03415 - glycosyltransferase family 4 protein, at 285,457 to 286,584 _RS03415 HMPREF1058_RS03410: HMPREF1058_RS03410 - hypothetical protein, at 286,618 to 287,601 _RS03410 HMPREF1058_RS03405: HMPREF1058_RS03405 - SDR family oxidoreductase, at 287,974 to 288,696 _RS03405 Position (kb) 286 287 288Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 285.666 kb on + strand, within HMPREF1058_RS03415at 285.755 kb on - strand, within HMPREF1058_RS03415at 285.769 kb on - strand, within HMPREF1058_RS03415at 285.773 kb on - strand, within HMPREF1058_RS03415at 285.782 kb on - strand, within HMPREF1058_RS03415at 285.782 kb on - strand, within HMPREF1058_RS03415at 285.800 kb on + strand, within HMPREF1058_RS03415at 285.800 kb on + strand, within HMPREF1058_RS03415at 285.800 kb on + strand, within HMPREF1058_RS03415at 285.800 kb on + strand, within HMPREF1058_RS03415at 285.801 kb on - strand, within HMPREF1058_RS03415at 285.804 kb on + strand, within HMPREF1058_RS03415at 285.972 kb on + strand, within HMPREF1058_RS03415at 285.972 kb on + strand, within HMPREF1058_RS03415at 285.994 kb on + strand, within HMPREF1058_RS03415at 285.995 kb on - strand, within HMPREF1058_RS03415at 285.995 kb on - strand, within HMPREF1058_RS03415at 286.025 kb on - strand, within HMPREF1058_RS03415at 286.096 kb on + strand, within HMPREF1058_RS03415at 286.096 kb on + strand, within HMPREF1058_RS03415at 286.099 kb on - strand, within HMPREF1058_RS03415at 286.099 kb on - strand, within HMPREF1058_RS03415at 286.102 kb on + strand, within HMPREF1058_RS03415at 286.114 kb on + strand, within HMPREF1058_RS03415at 286.195 kb on + strand, within HMPREF1058_RS03415at 286.196 kb on - strand, within HMPREF1058_RS03415at 286.196 kb on - strand, within HMPREF1058_RS03415at 286.204 kb on - strand, within HMPREF1058_RS03415at 286.228 kb on + strand, within HMPREF1058_RS03415at 286.240 kb on + strand, within HMPREF1058_RS03415at 286.240 kb on + strand, within HMPREF1058_RS03415at 286.240 kb on + strand, within HMPREF1058_RS03415at 286.241 kb on - strand, within HMPREF1058_RS03415at 286.249 kb on + strand, within HMPREF1058_RS03415at 286.249 kb on + strand, within HMPREF1058_RS03415at 286.249 kb on + strand, within HMPREF1058_RS03415at 286.253 kb on + strand, within HMPREF1058_RS03415at 286.254 kb on - strand, within HMPREF1058_RS03415at 286.263 kb on + strand, within HMPREF1058_RS03415at 286.280 kb on - strand, within HMPREF1058_RS03415at 286.284 kb on + strand, within HMPREF1058_RS03415at 286.339 kb on + strand, within HMPREF1058_RS03415at 286.425 kb on + strand, within HMPREF1058_RS03415at 286.426 kb on - strand, within HMPREF1058_RS03415at 286.430 kb on - strand, within HMPREF1058_RS03415at 286.444 kb on + strand, within HMPREF1058_RS03415at 286.445 kb on + strand, within HMPREF1058_RS03415at 286.445 kb on - strand, within HMPREF1058_RS03415at 286.450 kb on + strand, within HMPREF1058_RS03415at 286.509 kb on + strandat 286.509 kb on + strandat 286.526 kb on + strandat 286.527 kb on - strandat 286.564 kb on + strandat 286.565 kb on - strandat 286.570 kb on + strandat 286.616 kb on + strandat 286.702 kb on + strandat 286.702 kb on + strandat 286.702 kb on + strandat 286.706 kb on + strandat 286.707 kb on - strandat 286.707 kb on - strandat 286.710 kb on + strandat 286.711 kb on - strandat 286.725 kb on + strand, within HMPREF1058_RS03410at 286.775 kb on - strand, within HMPREF1058_RS03410at 286.775 kb on - strand, within HMPREF1058_RS03410at 286.788 kb on + strand, within HMPREF1058_RS03410at 286.803 kb on + strand, within HMPREF1058_RS03410at 286.843 kb on - strand, within HMPREF1058_RS03410at 286.860 kb on + strand, within HMPREF1058_RS03410at 286.861 kb on - strand, within HMPREF1058_RS03410at 286.911 kb on - strand, within HMPREF1058_RS03410at 286.953 kb on + strand, within HMPREF1058_RS03410at 286.953 kb on + strand, within HMPREF1058_RS03410at 286.954 kb on - strand, within HMPREF1058_RS03410at 286.972 kb on + strand, within HMPREF1058_RS03410at 287.026 kb on - strand, within HMPREF1058_RS03410at 287.058 kb on + strand, within HMPREF1058_RS03410at 287.058 kb on + strand, within HMPREF1058_RS03410at 287.061 kb on + strand, within HMPREF1058_RS03410at 287.078 kb on + strand, within HMPREF1058_RS03410at 287.078 kb on + strand, within HMPREF1058_RS03410at 287.078 kb on + strand, within HMPREF1058_RS03410at 287.079 kb on - strand, within HMPREF1058_RS03410at 287.230 kb on + strand, within HMPREF1058_RS03410at 287.231 kb on - strand, within HMPREF1058_RS03410at 287.235 kb on - strand, within HMPREF1058_RS03410at 287.298 kb on + strand, within HMPREF1058_RS03410at 287.299 kb on - strand, within HMPREF1058_RS03410at 287.299 kb on - strand, within HMPREF1058_RS03410at 287.306 kb on + strand, within HMPREF1058_RS03410at 287.352 kb on - strand, within HMPREF1058_RS03410at 287.355 kb on + strand, within HMPREF1058_RS03410at 287.358 kb on - strand, within HMPREF1058_RS03410at 287.420 kb on - strand, within HMPREF1058_RS03410at 287.439 kb on + strand, within HMPREF1058_RS03410at 287.440 kb on - strand, within HMPREF1058_RS03410at 287.474 kb on + strand, within HMPREF1058_RS03410at 287.475 kb on - strand, within HMPREF1058_RS03410at 287.475 kb on - strand, within HMPREF1058_RS03410at 287.541 kb on - strandat 287.541 kb on - strandat 287.545 kb on - strandat 287.548 kb on + strandat 287.548 kb on + strandat 287.553 kb on + strandat 287.553 kb on + strandat 287.554 kb on - strandat 287.554 kb on - strandat 287.558 kb on - strandat 287.558 kb on - strandat 287.558 kb on - strandat 287.559 kb on + strandat 287.559 kb on + strandat 287.560 kb on - strandat 287.584 kb on + strandat 287.588 kb on - strandat 287.590 kb on - strandat 287.612 kb on + strandat 287.816 kb on + strandat 287.928 kb on - strandat 287.930 kb on - strandat 287.931 kb on + strandat 287.946 kb on + strandat 288.012 kb on + strandat 288.018 kb on + strandat 288.018 kb on + strandat 288.174 kb on + strand, within HMPREF1058_RS03405at 288.251 kb on + strand, within HMPREF1058_RS03405at 288.251 kb on + strand, within HMPREF1058_RS03405at 288.251 kb on + strand, within HMPREF1058_RS03405at 288.252 kb on - strand, within HMPREF1058_RS03405at 288.252 kb on - strand, within HMPREF1058_RS03405at 288.252 kb on - strand, within HMPREF1058_RS03405at 288.277 kb on - strand, within HMPREF1058_RS03405at 288.277 kb on - strand, within HMPREF1058_RS03405at 288.298 kb on - strand, within HMPREF1058_RS03405at 288.306 kb on + strand, within HMPREF1058_RS03405at 288.306 kb on + strand, within HMPREF1058_RS03405at 288.333 kb on + strand, within HMPREF1058_RS03405at 288.334 kb on - strand, within HMPREF1058_RS03405at 288.336 kb on + strand, within HMPREF1058_RS03405at 288.369 kb on + strand, within HMPREF1058_RS03405at 288.594 kb on + strand, within HMPREF1058_RS03405

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Per-strain Table

Position Strand Gene LocusTag Fraction Dextran 5 mg/ml (C)
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285,666 + HMPREF1058_RS03415 0.19 -0.6
285,755 - HMPREF1058_RS03415 0.26 +2.4
285,769 - HMPREF1058_RS03415 0.28 -0.4
285,773 - HMPREF1058_RS03415 0.28 +0.6
285,782 - HMPREF1058_RS03415 0.29 -0.9
285,782 - HMPREF1058_RS03415 0.29 -2.3
285,800 + HMPREF1058_RS03415 0.30 -0.6
285,800 + HMPREF1058_RS03415 0.30 +0.4
285,800 + HMPREF1058_RS03415 0.30 -3.4
285,800 + HMPREF1058_RS03415 0.30 -0.9
285,801 - HMPREF1058_RS03415 0.30 -0.4
285,804 + HMPREF1058_RS03415 0.31 -2.1
285,972 + HMPREF1058_RS03415 0.46 -0.9
285,972 + HMPREF1058_RS03415 0.46 -0.6
285,994 + HMPREF1058_RS03415 0.48 +2.2
285,995 - HMPREF1058_RS03415 0.48 +1.6
285,995 - HMPREF1058_RS03415 0.48 -0.7
286,025 - HMPREF1058_RS03415 0.50 -0.6
286,096 + HMPREF1058_RS03415 0.57 +0.9
286,096 + HMPREF1058_RS03415 0.57 -2.0
286,099 - HMPREF1058_RS03415 0.57 +0.3
286,099 - HMPREF1058_RS03415 0.57 -3.8
286,102 + HMPREF1058_RS03415 0.57 +1.8
286,114 + HMPREF1058_RS03415 0.58 +0.3
286,195 + HMPREF1058_RS03415 0.65 -0.4
286,196 - HMPREF1058_RS03415 0.66 -1.8
286,196 - HMPREF1058_RS03415 0.66 +1.2
286,204 - HMPREF1058_RS03415 0.66 -0.4
286,228 + HMPREF1058_RS03415 0.68 +1.2
286,240 + HMPREF1058_RS03415 0.69 -0.7
286,240 + HMPREF1058_RS03415 0.69 +0.6
286,240 + HMPREF1058_RS03415 0.69 -0.1
286,241 - HMPREF1058_RS03415 0.70 +2.3
286,249 + HMPREF1058_RS03415 0.70 -2.2
286,249 + HMPREF1058_RS03415 0.70 -0.2
286,249 + HMPREF1058_RS03415 0.70 +1.2
286,253 + HMPREF1058_RS03415 0.71 +0.2
286,254 - HMPREF1058_RS03415 0.71 -0.2
286,263 + HMPREF1058_RS03415 0.71 +0.1
286,280 - HMPREF1058_RS03415 0.73 -0.0
286,284 + HMPREF1058_RS03415 0.73 +2.6
286,339 + HMPREF1058_RS03415 0.78 -1.1
286,425 + HMPREF1058_RS03415 0.86 +0.5
286,426 - HMPREF1058_RS03415 0.86 -0.6
286,430 - HMPREF1058_RS03415 0.86 -1.7
286,444 + HMPREF1058_RS03415 0.88 -0.2
286,445 + HMPREF1058_RS03415 0.88 +0.1
286,445 - HMPREF1058_RS03415 0.88 -3.1
286,450 + HMPREF1058_RS03415 0.88 -2.8
286,509 + -2.9
286,509 + +1.6
286,526 + -0.4
286,527 - -0.0
286,564 + -1.1
286,565 - +0.6
286,570 + -1.7
286,616 + +0.2
286,702 + -1.2
286,702 + +0.2
286,702 + +2.1
286,706 + -0.1
286,707 - -1.1
286,707 - +2.4
286,710 + -1.0
286,711 - -1.6
286,725 + HMPREF1058_RS03410 0.11 -1.7
286,775 - HMPREF1058_RS03410 0.16 -1.8
286,775 - HMPREF1058_RS03410 0.16 -0.4
286,788 + HMPREF1058_RS03410 0.17 +1.6
286,803 + HMPREF1058_RS03410 0.19 +1.3
286,843 - HMPREF1058_RS03410 0.23 +0.6
286,860 + HMPREF1058_RS03410 0.25 +0.6
286,861 - HMPREF1058_RS03410 0.25 +0.6
286,911 - HMPREF1058_RS03410 0.30 -1.0
286,953 + HMPREF1058_RS03410 0.34 -2.7
286,953 + HMPREF1058_RS03410 0.34 -0.6
286,954 - HMPREF1058_RS03410 0.34 -0.4
286,972 + HMPREF1058_RS03410 0.36 -1.7
287,026 - HMPREF1058_RS03410 0.41 -0.7
287,058 + HMPREF1058_RS03410 0.45 -0.2
287,058 + HMPREF1058_RS03410 0.45 +0.6
287,061 + HMPREF1058_RS03410 0.45 -1.9
287,078 + HMPREF1058_RS03410 0.47 +0.3
287,078 + HMPREF1058_RS03410 0.47 -1.6
287,078 + HMPREF1058_RS03410 0.47 +1.0
287,079 - HMPREF1058_RS03410 0.47 +0.0
287,230 + HMPREF1058_RS03410 0.62 +0.5
287,231 - HMPREF1058_RS03410 0.62 -0.2
287,235 - HMPREF1058_RS03410 0.63 +0.0
287,298 + HMPREF1058_RS03410 0.69 -0.2
287,299 - HMPREF1058_RS03410 0.69 -1.1
287,299 - HMPREF1058_RS03410 0.69 +0.6
287,306 + HMPREF1058_RS03410 0.70 -1.6
287,352 - HMPREF1058_RS03410 0.75 -1.1
287,355 + HMPREF1058_RS03410 0.75 -0.8
287,358 - HMPREF1058_RS03410 0.75 +0.1
287,420 - HMPREF1058_RS03410 0.82 -2.4
287,439 + HMPREF1058_RS03410 0.83 +1.5
287,440 - HMPREF1058_RS03410 0.84 -0.0
287,474 + HMPREF1058_RS03410 0.87 -1.0
287,475 - HMPREF1058_RS03410 0.87 -0.4
287,475 - HMPREF1058_RS03410 0.87 -1.4
287,541 - +0.6
287,541 - -0.6
287,545 - +1.2
287,548 + -0.1
287,548 + -1.7
287,553 + -0.0
287,553 + -0.4
287,554 - -1.8
287,554 - +2.6
287,558 - +0.7
287,558 - +0.4
287,558 - +2.6
287,559 + -0.7
287,559 + +0.5
287,560 - -2.6
287,584 + +0.5
287,588 - -1.2
287,590 - +0.8
287,612 + -2.5
287,816 + -1.6
287,928 - -1.0
287,930 - +0.5
287,931 + -1.9
287,946 + -0.2
288,012 + -0.0
288,018 + +0.3
288,018 + +0.9
288,174 + HMPREF1058_RS03405 0.28 -1.6
288,251 + HMPREF1058_RS03405 0.38 -0.7
288,251 + HMPREF1058_RS03405 0.38 -3.1
288,251 + HMPREF1058_RS03405 0.38 -1.7
288,252 - HMPREF1058_RS03405 0.38 -2.1
288,252 - HMPREF1058_RS03405 0.38 -0.4
288,252 - HMPREF1058_RS03405 0.38 -3.3
288,277 - HMPREF1058_RS03405 0.42 -1.3
288,277 - HMPREF1058_RS03405 0.42 -0.1
288,298 - HMPREF1058_RS03405 0.45 -0.2
288,306 + HMPREF1058_RS03405 0.46 -0.9
288,306 + HMPREF1058_RS03405 0.46 -0.7
288,333 + HMPREF1058_RS03405 0.50 -1.0
288,334 - HMPREF1058_RS03405 0.50 -0.7
288,336 + HMPREF1058_RS03405 0.50 -2.9
288,369 + HMPREF1058_RS03405 0.55 -1.8
288,594 + HMPREF1058_RS03405 0.86 +0.9

Or see this region's nucleotide sequence