Experiment: Dextran 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03400 and HMPREF1058_RS03395 are separated by 7 nucleotides HMPREF1058_RS03395 and HMPREF1058_RS03390 are separated by 13 nucleotides HMPREF1058_RS03390 and HMPREF1058_RS03385 are separated by 20 nucleotides HMPREF1058_RS03385 and HMPREF1058_RS03380 are separated by 3 nucleotides
HMPREF1058_RS03400: HMPREF1058_RS03400 - long-chain fatty acid--CoA ligase, at 288,693 to 289,907
_RS03400
HMPREF1058_RS03395: HMPREF1058_RS03395 - acyl carrier protein, at 289,915 to 290,139
_RS03395
HMPREF1058_RS03390: HMPREF1058_RS03390 - GNAT family N-acetyltransferase, at 290,153 to 290,626
_RS03390
HMPREF1058_RS03385: HMPREF1058_RS03385 - ATP-grasp domain-containing protein, at 290,647 to 291,852
_RS03385
HMPREF1058_RS03380: HMPREF1058_RS03380 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 291,856 to 292,965
_RS03380
Position (kb) 290
291
292 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 289.761 kb on - strand, within HMPREF1058_RS03400 at 289.822 kb on - strand at 289.831 kb on + strand at 289.831 kb on + strand at 289.832 kb on - strand at 289.832 kb on - strand at 289.841 kb on + strand at 289.841 kb on + strand at 289.842 kb on - strand at 289.845 kb on + strand at 289.855 kb on - strand at 289.868 kb on - strand at 289.872 kb on - strand at 289.872 kb on - strand at 289.872 kb on - strand at 289.872 kb on - strand at 289.872 kb on - strand at 289.902 kb on - strand at 290.073 kb on + strand, within HMPREF1058_RS03395 at 290.113 kb on - strand, within HMPREF1058_RS03395 at 290.126 kb on - strand at 290.219 kb on + strand, within HMPREF1058_RS03390 at 290.252 kb on + strand, within HMPREF1058_RS03390 at 290.252 kb on + strand, within HMPREF1058_RS03390 at 290.253 kb on - strand, within HMPREF1058_RS03390 at 290.311 kb on - strand, within HMPREF1058_RS03390 at 290.335 kb on + strand, within HMPREF1058_RS03390 at 290.335 kb on + strand, within HMPREF1058_RS03390 at 290.354 kb on - strand, within HMPREF1058_RS03390 at 290.354 kb on - strand, within HMPREF1058_RS03390 at 290.354 kb on - strand, within HMPREF1058_RS03390 at 290.440 kb on + strand, within HMPREF1058_RS03390 at 290.502 kb on + strand, within HMPREF1058_RS03390 at 290.503 kb on - strand, within HMPREF1058_RS03390 at 290.508 kb on - strand, within HMPREF1058_RS03390 at 290.525 kb on - strand, within HMPREF1058_RS03390 at 290.611 kb on + strand at 290.612 kb on - strand at 290.612 kb on - strand at 290.612 kb on - strand at 290.613 kb on + strand at 290.615 kb on + strand at 290.618 kb on + strand at 290.715 kb on + strand at 290.746 kb on - strand at 290.803 kb on + strand, within HMPREF1058_RS03385 at 290.811 kb on - strand, within HMPREF1058_RS03385 at 290.827 kb on - strand, within HMPREF1058_RS03385 at 290.835 kb on - strand, within HMPREF1058_RS03385 at 290.897 kb on + strand, within HMPREF1058_RS03385 at 290.897 kb on + strand, within HMPREF1058_RS03385 at 290.898 kb on - strand, within HMPREF1058_RS03385 at 290.898 kb on - strand, within HMPREF1058_RS03385 at 291.035 kb on + strand at 291.035 kb on + strand, within HMPREF1058_RS03385 at 291.036 kb on - strand, within HMPREF1058_RS03385 at 291.055 kb on + strand, within HMPREF1058_RS03385 at 291.056 kb on - strand, within HMPREF1058_RS03385 at 291.073 kb on - strand, within HMPREF1058_RS03385 at 291.148 kb on - strand, within HMPREF1058_RS03385 at 291.310 kb on - strand, within HMPREF1058_RS03385 at 291.324 kb on + strand, within HMPREF1058_RS03385 at 291.498 kb on + strand, within HMPREF1058_RS03385 at 291.547 kb on + strand, within HMPREF1058_RS03385 at 291.583 kb on - strand, within HMPREF1058_RS03385 at 291.652 kb on + strand, within HMPREF1058_RS03385 at 291.695 kb on - strand, within HMPREF1058_RS03385 at 291.696 kb on + strand, within HMPREF1058_RS03385 at 291.724 kb on - strand, within HMPREF1058_RS03385 at 291.729 kb on + strand, within HMPREF1058_RS03385 at 291.753 kb on - strand at 291.863 kb on - strand at 291.880 kb on - strand at 291.946 kb on - strand at 292.010 kb on - strand, within HMPREF1058_RS03380 at 292.010 kb on - strand, within HMPREF1058_RS03380 at 292.025 kb on + strand, within HMPREF1058_RS03380 at 292.025 kb on + strand, within HMPREF1058_RS03380 at 292.088 kb on + strand, within HMPREF1058_RS03380 at 292.118 kb on + strand, within HMPREF1058_RS03380 at 292.199 kb on - strand, within HMPREF1058_RS03380 at 292.350 kb on + strand, within HMPREF1058_RS03380 at 292.401 kb on + strand, within HMPREF1058_RS03380 at 292.401 kb on + strand, within HMPREF1058_RS03380 at 292.401 kb on + strand, within HMPREF1058_RS03380 at 292.406 kb on + strand, within HMPREF1058_RS03380 at 292.407 kb on - strand, within HMPREF1058_RS03380 at 292.407 kb on - strand, within HMPREF1058_RS03380 at 292.441 kb on - strand, within HMPREF1058_RS03380 at 292.503 kb on - strand, within HMPREF1058_RS03380 at 292.520 kb on + strand, within HMPREF1058_RS03380 at 292.521 kb on - strand, within HMPREF1058_RS03380 at 292.571 kb on - strand, within HMPREF1058_RS03380 at 292.639 kb on - strand, within HMPREF1058_RS03380 at 292.803 kb on + strand, within HMPREF1058_RS03380
Per-strain Table
Position Strand Gene LocusTag Fraction Dextran 5 mg/ml (C) remove 289,761 - HMPREF1058_RS03400 0.88 +0.6 289,822 - -1.0 289,831 + -1.4 289,831 + +0.8 289,832 - -1.1 289,832 - -2.8 289,841 + -1.2 289,841 + -0.4 289,842 - +1.2 289,845 + +0.4 289,855 - -1.6 289,868 - +2.3 289,872 - +1.6 289,872 - +0.9 289,872 - +1.1 289,872 - +1.6 289,872 - +0.6 289,902 - +0.3 290,073 + HMPREF1058_RS03395 0.70 -0.4 290,113 - HMPREF1058_RS03395 0.88 -1.4 290,126 - -1.5 290,219 + HMPREF1058_RS03390 0.14 -0.8 290,252 + HMPREF1058_RS03390 0.21 -0.4 290,252 + HMPREF1058_RS03390 0.21 +0.3 290,253 - HMPREF1058_RS03390 0.21 +1.8 290,311 - HMPREF1058_RS03390 0.33 -0.9 290,335 + HMPREF1058_RS03390 0.38 -1.1 290,335 + HMPREF1058_RS03390 0.38 +1.4 290,354 - HMPREF1058_RS03390 0.42 -2.9 290,354 - HMPREF1058_RS03390 0.42 +2.1 290,354 - HMPREF1058_RS03390 0.42 -1.7 290,440 + HMPREF1058_RS03390 0.61 -0.3 290,502 + HMPREF1058_RS03390 0.74 -2.7 290,503 - HMPREF1058_RS03390 0.74 +0.5 290,508 - HMPREF1058_RS03390 0.75 +1.0 290,525 - HMPREF1058_RS03390 0.78 +0.2 290,611 + -0.9 290,612 - +1.2 290,612 - +0.6 290,612 - -2.6 290,613 + -3.0 290,615 + +4.2 290,618 + +0.3 290,715 + +1.6 290,746 - -0.2 290,803 + HMPREF1058_RS03385 0.13 +0.7 290,811 - HMPREF1058_RS03385 0.14 +0.4 290,827 - HMPREF1058_RS03385 0.15 -0.0 290,835 - HMPREF1058_RS03385 0.16 -3.7 290,897 + HMPREF1058_RS03385 0.21 -0.6 290,897 + HMPREF1058_RS03385 0.21 -0.4 290,898 - HMPREF1058_RS03385 0.21 -1.1 290,898 - HMPREF1058_RS03385 0.21 +0.6 291,035 + +0.3 291,035 + HMPREF1058_RS03385 0.32 -0.6 291,036 - HMPREF1058_RS03385 0.32 -0.6 291,055 + HMPREF1058_RS03385 0.34 -0.1 291,056 - HMPREF1058_RS03385 0.34 -0.4 291,073 - HMPREF1058_RS03385 0.35 +0.8 291,148 - HMPREF1058_RS03385 0.42 -1.3 291,310 - HMPREF1058_RS03385 0.55 -2.5 291,324 + HMPREF1058_RS03385 0.56 -2.2 291,498 + HMPREF1058_RS03385 0.71 -3.7 291,547 + HMPREF1058_RS03385 0.75 -2.3 291,583 - HMPREF1058_RS03385 0.78 -2.4 291,652 + HMPREF1058_RS03385 0.83 -0.6 291,695 - HMPREF1058_RS03385 0.87 -3.1 291,696 + HMPREF1058_RS03385 0.87 -1.4 291,724 - HMPREF1058_RS03385 0.89 +0.3 291,729 + HMPREF1058_RS03385 0.90 -1.3 291,753 - -2.1 291,863 - +2.8 291,880 - -0.1 291,946 - -0.9 292,010 - HMPREF1058_RS03380 0.14 -3.2 292,010 - HMPREF1058_RS03380 0.14 -1.0 292,025 + HMPREF1058_RS03380 0.15 -1.2 292,025 + HMPREF1058_RS03380 0.15 -2.1 292,088 + HMPREF1058_RS03380 0.21 +0.2 292,118 + HMPREF1058_RS03380 0.24 -0.2 292,199 - HMPREF1058_RS03380 0.31 -1.2 292,350 + HMPREF1058_RS03380 0.45 -0.7 292,401 + HMPREF1058_RS03380 0.49 +0.6 292,401 + HMPREF1058_RS03380 0.49 -0.7 292,401 + HMPREF1058_RS03380 0.49 -2.1 292,406 + HMPREF1058_RS03380 0.50 +1.2 292,407 - HMPREF1058_RS03380 0.50 +0.2 292,407 - HMPREF1058_RS03380 0.50 -1.7 292,441 - HMPREF1058_RS03380 0.53 +0.6 292,503 - HMPREF1058_RS03380 0.58 +1.6 292,520 + HMPREF1058_RS03380 0.60 -0.7 292,521 - HMPREF1058_RS03380 0.60 +0.0 292,571 - HMPREF1058_RS03380 0.64 +0.7 292,639 - HMPREF1058_RS03380 0.71 -1.0 292,803 + HMPREF1058_RS03380 0.85 -1.6
Or see this region's nucleotide sequence