Experiment: Dextran 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03385 and HMPREF1058_RS03380 are separated by 3 nucleotides HMPREF1058_RS03380 and HMPREF1058_RS03375 are separated by 17 nucleotides
HMPREF1058_RS03385: HMPREF1058_RS03385 - ATP-grasp domain-containing protein, at 290,647 to 291,852
_RS03385
HMPREF1058_RS03380: HMPREF1058_RS03380 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 291,856 to 292,965
_RS03380
HMPREF1058_RS03375: HMPREF1058_RS03375 - lipopolysaccharide biosynthesis protein, at 292,983 to 294,416
_RS03375
Position (kb) 291
292
293 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 290.897 kb on + strand, within HMPREF1058_RS03385 at 290.897 kb on + strand, within HMPREF1058_RS03385 at 290.898 kb on - strand, within HMPREF1058_RS03385 at 290.898 kb on - strand, within HMPREF1058_RS03385 at 291.035 kb on + strand, within HMPREF1058_RS03385 at 291.036 kb on - strand, within HMPREF1058_RS03385 at 291.055 kb on + strand, within HMPREF1058_RS03385 at 291.056 kb on - strand, within HMPREF1058_RS03385 at 291.073 kb on - strand, within HMPREF1058_RS03385 at 291.148 kb on - strand, within HMPREF1058_RS03385 at 291.310 kb on - strand, within HMPREF1058_RS03385 at 291.324 kb on + strand, within HMPREF1058_RS03385 at 291.498 kb on + strand, within HMPREF1058_RS03385 at 291.547 kb on + strand, within HMPREF1058_RS03385 at 291.583 kb on - strand, within HMPREF1058_RS03385 at 291.652 kb on + strand, within HMPREF1058_RS03385 at 291.695 kb on - strand, within HMPREF1058_RS03385 at 291.696 kb on + strand, within HMPREF1058_RS03385 at 291.724 kb on - strand, within HMPREF1058_RS03385 at 291.729 kb on + strand, within HMPREF1058_RS03385 at 291.753 kb on - strand at 291.880 kb on - strand at 291.946 kb on - strand at 292.010 kb on - strand, within HMPREF1058_RS03380 at 292.010 kb on - strand, within HMPREF1058_RS03380 at 292.025 kb on + strand, within HMPREF1058_RS03380 at 292.025 kb on + strand, within HMPREF1058_RS03380 at 292.088 kb on + strand, within HMPREF1058_RS03380 at 292.199 kb on - strand, within HMPREF1058_RS03380 at 292.350 kb on + strand, within HMPREF1058_RS03380 at 292.401 kb on + strand, within HMPREF1058_RS03380 at 292.401 kb on + strand, within HMPREF1058_RS03380 at 292.401 kb on + strand, within HMPREF1058_RS03380 at 292.406 kb on + strand, within HMPREF1058_RS03380 at 292.407 kb on - strand, within HMPREF1058_RS03380 at 292.407 kb on - strand, within HMPREF1058_RS03380 at 292.441 kb on - strand, within HMPREF1058_RS03380 at 292.503 kb on - strand, within HMPREF1058_RS03380 at 292.520 kb on + strand, within HMPREF1058_RS03380 at 292.521 kb on - strand, within HMPREF1058_RS03380 at 292.571 kb on - strand, within HMPREF1058_RS03380 at 292.639 kb on - strand, within HMPREF1058_RS03380 at 292.803 kb on + strand, within HMPREF1058_RS03380 at 293.054 kb on - strand at 293.095 kb on + strand at 293.190 kb on - strand, within HMPREF1058_RS03375 at 293.202 kb on + strand, within HMPREF1058_RS03375 at 293.333 kb on + strand, within HMPREF1058_RS03375 at 293.678 kb on + strand, within HMPREF1058_RS03375 at 293.679 kb on - strand, within HMPREF1058_RS03375 at 293.679 kb on - strand, within HMPREF1058_RS03375 at 293.680 kb on + strand, within HMPREF1058_RS03375 at 293.680 kb on + strand, within HMPREF1058_RS03375 at 293.729 kb on - strand, within HMPREF1058_RS03375 at 293.729 kb on - strand, within HMPREF1058_RS03375 at 293.732 kb on + strand, within HMPREF1058_RS03375 at 293.732 kb on + strand, within HMPREF1058_RS03375 at 293.741 kb on - strand, within HMPREF1058_RS03375 at 293.815 kb on + strand, within HMPREF1058_RS03375 at 293.854 kb on - strand, within HMPREF1058_RS03375 at 293.893 kb on - strand, within HMPREF1058_RS03375 at 293.929 kb on - strand, within HMPREF1058_RS03375
Per-strain Table
Position Strand Gene LocusTag Fraction Dextran 5 mg/ml (C) remove 290,897 + HMPREF1058_RS03385 0.21 -0.6 290,897 + HMPREF1058_RS03385 0.21 -0.4 290,898 - HMPREF1058_RS03385 0.21 -1.1 290,898 - HMPREF1058_RS03385 0.21 +0.6 291,035 + HMPREF1058_RS03385 0.32 -0.6 291,036 - HMPREF1058_RS03385 0.32 -0.6 291,055 + HMPREF1058_RS03385 0.34 -0.1 291,056 - HMPREF1058_RS03385 0.34 -0.4 291,073 - HMPREF1058_RS03385 0.35 +0.8 291,148 - HMPREF1058_RS03385 0.42 -1.3 291,310 - HMPREF1058_RS03385 0.55 -2.5 291,324 + HMPREF1058_RS03385 0.56 -2.2 291,498 + HMPREF1058_RS03385 0.71 -3.7 291,547 + HMPREF1058_RS03385 0.75 -2.3 291,583 - HMPREF1058_RS03385 0.78 -2.4 291,652 + HMPREF1058_RS03385 0.83 -0.6 291,695 - HMPREF1058_RS03385 0.87 -3.1 291,696 + HMPREF1058_RS03385 0.87 -1.4 291,724 - HMPREF1058_RS03385 0.89 +0.3 291,729 + HMPREF1058_RS03385 0.90 -1.3 291,753 - -2.1 291,880 - -0.1 291,946 - -0.9 292,010 - HMPREF1058_RS03380 0.14 -3.2 292,010 - HMPREF1058_RS03380 0.14 -1.0 292,025 + HMPREF1058_RS03380 0.15 -1.2 292,025 + HMPREF1058_RS03380 0.15 -2.1 292,088 + HMPREF1058_RS03380 0.21 +0.2 292,199 - HMPREF1058_RS03380 0.31 -1.2 292,350 + HMPREF1058_RS03380 0.45 -0.7 292,401 + HMPREF1058_RS03380 0.49 +0.6 292,401 + HMPREF1058_RS03380 0.49 -0.7 292,401 + HMPREF1058_RS03380 0.49 -2.1 292,406 + HMPREF1058_RS03380 0.50 +1.2 292,407 - HMPREF1058_RS03380 0.50 +0.2 292,407 - HMPREF1058_RS03380 0.50 -1.7 292,441 - HMPREF1058_RS03380 0.53 +0.6 292,503 - HMPREF1058_RS03380 0.58 +1.6 292,520 + HMPREF1058_RS03380 0.60 -0.7 292,521 - HMPREF1058_RS03380 0.60 +0.0 292,571 - HMPREF1058_RS03380 0.64 +0.7 292,639 - HMPREF1058_RS03380 0.71 -1.0 292,803 + HMPREF1058_RS03380 0.85 -1.6 293,054 - +1.5 293,095 + +0.7 293,190 - HMPREF1058_RS03375 0.14 -0.2 293,202 + HMPREF1058_RS03375 0.15 -0.4 293,333 + HMPREF1058_RS03375 0.24 -0.4 293,678 + HMPREF1058_RS03375 0.48 -0.8 293,679 - HMPREF1058_RS03375 0.49 -0.6 293,679 - HMPREF1058_RS03375 0.49 +1.0 293,680 + HMPREF1058_RS03375 0.49 -0.0 293,680 + HMPREF1058_RS03375 0.49 +1.3 293,729 - HMPREF1058_RS03375 0.52 +1.2 293,729 - HMPREF1058_RS03375 0.52 -1.7 293,732 + HMPREF1058_RS03375 0.52 -0.0 293,732 + HMPREF1058_RS03375 0.52 +1.2 293,741 - HMPREF1058_RS03375 0.53 -1.5 293,815 + HMPREF1058_RS03375 0.58 +2.1 293,854 - HMPREF1058_RS03375 0.61 -0.6 293,893 - HMPREF1058_RS03375 0.63 -1.0 293,929 - HMPREF1058_RS03375 0.66 -1.7
Or see this region's nucleotide sequence