Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS03030

Experiment: Dextran 5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS21680 and HMPREF1058_RS03035 are separated by 205 nucleotidesHMPREF1058_RS03035 and HMPREF1058_RS03030 are separated by 11 nucleotidesHMPREF1058_RS03030 and HMPREF1058_RS21685 overlap by 29 nucleotides HMPREF1058_RS21680: HMPREF1058_RS21680 - ATP-binding cassette domain-containing protein, at 26,214 to 27,101 _RS21680 HMPREF1058_RS03035: HMPREF1058_RS03035 - hypothetical protein, at 27,307 to 27,783 _RS03035 HMPREF1058_RS03030: HMPREF1058_RS03030 - hypothetical protein, at 27,795 to 29,303 _RS03030 HMPREF1058_RS21685: HMPREF1058_RS21685 - hypothetical protein, at 29,275 to 29,427 _RS21685 Position (kb) 27 28 29 30Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 26.861 kb on + strand, within HMPREF1058_RS21680at 26.861 kb on + strand, within HMPREF1058_RS21680at 26.923 kb on + strand, within HMPREF1058_RS21680at 26.981 kb on - strand, within HMPREF1058_RS21680at 27.068 kb on + strandat 27.069 kb on - strandat 27.069 kb on - strandat 27.072 kb on + strandat 27.072 kb on + strandat 27.073 kb on - strandat 27.073 kb on - strandat 27.114 kb on - strandat 27.161 kb on + strandat 27.162 kb on - strandat 27.265 kb on + strandat 27.441 kb on + strand, within HMPREF1058_RS03035at 27.442 kb on - strand, within HMPREF1058_RS03035at 27.447 kb on + strand, within HMPREF1058_RS03035at 27.447 kb on + strand, within HMPREF1058_RS03035at 27.527 kb on + strand, within HMPREF1058_RS03035at 27.527 kb on + strand, within HMPREF1058_RS03035at 27.570 kb on - strand, within HMPREF1058_RS03035at 27.593 kb on - strand, within HMPREF1058_RS03035at 27.610 kb on + strand, within HMPREF1058_RS03035at 27.610 kb on + strand, within HMPREF1058_RS03035at 27.771 kb on + strandat 27.808 kb on + strandat 27.924 kb on + strandat 27.925 kb on - strandat 27.925 kb on - strandat 28.205 kb on + strand, within HMPREF1058_RS03030at 28.259 kb on + strand, within HMPREF1058_RS03030at 28.263 kb on + strand, within HMPREF1058_RS03030at 28.263 kb on + strand, within HMPREF1058_RS03030at 28.263 kb on + strand, within HMPREF1058_RS03030at 28.263 kb on + strand, within HMPREF1058_RS03030at 28.263 kb on + strand, within HMPREF1058_RS03030at 28.264 kb on - strand, within HMPREF1058_RS03030at 28.268 kb on - strand, within HMPREF1058_RS03030at 28.405 kb on - strand, within HMPREF1058_RS03030at 28.425 kb on + strand, within HMPREF1058_RS03030at 28.431 kb on + strand, within HMPREF1058_RS03030at 28.589 kb on - strand, within HMPREF1058_RS03030at 28.677 kb on - strand, within HMPREF1058_RS03030at 28.722 kb on + strand, within HMPREF1058_RS03030at 28.727 kb on + strand, within HMPREF1058_RS03030at 28.780 kb on - strand, within HMPREF1058_RS03030at 28.793 kb on + strand, within HMPREF1058_RS03030at 28.929 kb on + strand, within HMPREF1058_RS03030at 28.930 kb on - strand, within HMPREF1058_RS03030at 29.021 kb on + strand, within HMPREF1058_RS03030at 29.050 kb on + strand, within HMPREF1058_RS03030at 29.073 kb on - strand, within HMPREF1058_RS03030at 29.080 kb on + strand, within HMPREF1058_RS03030at 29.080 kb on + strand, within HMPREF1058_RS03030at 29.080 kb on + strand, within HMPREF1058_RS03030at 29.081 kb on - strand, within HMPREF1058_RS03030at 29.128 kb on - strand, within HMPREF1058_RS03030at 29.197 kb on + strandat 29.198 kb on - strandat 29.198 kb on - strandat 29.406 kb on - strand, within HMPREF1058_RS21685at 29.451 kb on - strandat 29.455 kb on - strandat 29.519 kb on + strandat 29.520 kb on - strandat 29.520 kb on - strandat 29.560 kb on + strandat 29.561 kb on - strandat 29.587 kb on - strandat 29.587 kb on - strandat 29.604 kb on + strandat 29.605 kb on - strandat 29.627 kb on - strandat 29.697 kb on + strandat 29.856 kb on - strandat 29.938 kb on + strandat 29.945 kb on + strandat 29.946 kb on - strandat 30.010 kb on - strandat 30.054 kb on + strandat 30.087 kb on - strandat 30.087 kb on - strandat 30.090 kb on + strandat 30.179 kb on + strandat 30.180 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dextran 5 mg/ml (C)
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26,861 + HMPREF1058_RS21680 0.73 +1.9
26,861 + HMPREF1058_RS21680 0.73 +0.0
26,923 + HMPREF1058_RS21680 0.80 -3.2
26,981 - HMPREF1058_RS21680 0.86 +0.4
27,068 + -1.6
27,069 - -2.4
27,069 - +0.3
27,072 + +0.8
27,072 + +0.4
27,073 - +0.3
27,073 - +0.5
27,114 - -2.5
27,161 + -0.1
27,162 - -1.9
27,265 + -1.9
27,441 + HMPREF1058_RS03035 0.28 -1.4
27,442 - HMPREF1058_RS03035 0.28 +1.2
27,447 + HMPREF1058_RS03035 0.29 -0.6
27,447 + HMPREF1058_RS03035 0.29 -0.6
27,527 + HMPREF1058_RS03035 0.46 +1.0
27,527 + HMPREF1058_RS03035 0.46 +1.0
27,570 - HMPREF1058_RS03035 0.55 +1.0
27,593 - HMPREF1058_RS03035 0.60 +0.5
27,610 + HMPREF1058_RS03035 0.64 +2.2
27,610 + HMPREF1058_RS03035 0.64 +0.9
27,771 + +0.4
27,808 + +1.5
27,924 + +0.7
27,925 - -1.5
27,925 - +0.4
28,205 + HMPREF1058_RS03030 0.27 +1.9
28,259 + HMPREF1058_RS03030 0.31 -1.9
28,263 + HMPREF1058_RS03030 0.31 +0.0
28,263 + HMPREF1058_RS03030 0.31 +0.1
28,263 + HMPREF1058_RS03030 0.31 -0.2
28,263 + HMPREF1058_RS03030 0.31 +0.1
28,263 + HMPREF1058_RS03030 0.31 -1.3
28,264 - HMPREF1058_RS03030 0.31 +0.2
28,268 - HMPREF1058_RS03030 0.31 +0.5
28,405 - HMPREF1058_RS03030 0.40 +0.3
28,425 + HMPREF1058_RS03030 0.42 +0.6
28,431 + HMPREF1058_RS03030 0.42 -0.2
28,589 - HMPREF1058_RS03030 0.53 +0.2
28,677 - HMPREF1058_RS03030 0.58 +0.4
28,722 + HMPREF1058_RS03030 0.61 -0.3
28,727 + HMPREF1058_RS03030 0.62 -0.4
28,780 - HMPREF1058_RS03030 0.65 +0.6
28,793 + HMPREF1058_RS03030 0.66 +0.3
28,929 + HMPREF1058_RS03030 0.75 +0.9
28,930 - HMPREF1058_RS03030 0.75 +0.3
29,021 + HMPREF1058_RS03030 0.81 -1.2
29,050 + HMPREF1058_RS03030 0.83 +0.8
29,073 - HMPREF1058_RS03030 0.85 -0.3
29,080 + HMPREF1058_RS03030 0.85 -0.5
29,080 + HMPREF1058_RS03030 0.85 +0.9
29,080 + HMPREF1058_RS03030 0.85 -0.1
29,081 - HMPREF1058_RS03030 0.85 -0.4
29,128 - HMPREF1058_RS03030 0.88 +0.4
29,197 + +1.3
29,198 - +1.1
29,198 - +1.5
29,406 - HMPREF1058_RS21685 0.86 +0.4
29,451 - +0.4
29,455 - -1.4
29,519 + +0.1
29,520 - -0.8
29,520 - +0.3
29,560 + +0.4
29,561 - +0.8
29,587 - -1.4
29,587 - +0.2
29,604 + +1.2
29,605 - +0.3
29,627 - -0.5
29,697 + +0.9
29,856 - -1.1
29,938 + -0.3
29,945 + +1.4
29,946 - +0.5
30,010 - -2.6
30,054 + +0.3
30,087 - -1.5
30,087 - -0.0
30,090 + +1.4
30,179 + +0.3
30,180 - -0.8

Or see this region's nucleotide sequence