Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_4052

Experiment: Cholin acetate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_4051 and Ga0059261_4052 are separated by 90 nucleotidesGa0059261_4052 and Ga0059261_4053 overlap by 4 nucleotidesGa0059261_4053 and Ga0059261_4054 are separated by 1 nucleotidesGa0059261_4054 and Ga0059261_4055 are separated by 48 nucleotides Ga0059261_4051: Ga0059261_4051 - Transcriptional regulator, at 4,178,254 to 4,179,120 _4051 Ga0059261_4052: Ga0059261_4052 - Acyl-CoA dehydrogenases, at 4,179,211 to 4,180,368 _4052 Ga0059261_4053: Ga0059261_4053 - hypothetical protein, at 4,180,365 to 4,180,712 _4053 Ga0059261_4054: Ga0059261_4054 - Uncharacterized protein conserved in bacteria, at 4,180,714 to 4,181,052 _4054 Ga0059261_4055: Ga0059261_4055 - Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta), at 4,181,101 to 4,182,702 _4055 Position (kb) 4179 4180 4181Strain fitness (log2 ratio) -2 -1 0 1 2at 4178.234 kb on + strandat 4178.235 kb on - strandat 4178.235 kb on - strandat 4178.235 kb on - strandat 4178.413 kb on + strand, within Ga0059261_4051at 4178.469 kb on + strand, within Ga0059261_4051at 4178.469 kb on + strand, within Ga0059261_4051at 4178.469 kb on + strand, within Ga0059261_4051at 4178.470 kb on - strand, within Ga0059261_4051at 4178.510 kb on + strandat 4178.511 kb on - strand, within Ga0059261_4051at 4178.511 kb on - strand, within Ga0059261_4051at 4179.120 kb on + strandat 4179.120 kb on + strandat 4179.121 kb on - strandat 4179.121 kb on - strandat 4179.132 kb on - strandat 4179.132 kb on - strandat 4179.180 kb on + strandat 4179.180 kb on + strandat 4179.180 kb on + strandat 4179.181 kb on - strandat 4179.185 kb on + strandat 4179.487 kb on + strand, within Ga0059261_4052at 4179.488 kb on - strand, within Ga0059261_4052at 4179.488 kb on - strand, within Ga0059261_4052at 4179.488 kb on - strand, within Ga0059261_4052at 4179.488 kb on - strand, within Ga0059261_4052at 4179.488 kb on - strand, within Ga0059261_4052at 4179.556 kb on + strand, within Ga0059261_4052at 4179.556 kb on + strand, within Ga0059261_4052at 4179.556 kb on + strand, within Ga0059261_4052at 4179.556 kb on + strand, within Ga0059261_4052at 4179.557 kb on - strand, within Ga0059261_4052at 4179.671 kb on - strand, within Ga0059261_4052at 4179.671 kb on - strand, within Ga0059261_4052at 4179.671 kb on - strand, within Ga0059261_4052at 4179.671 kb on - strand, within Ga0059261_4052at 4179.712 kb on + strand, within Ga0059261_4052at 4179.712 kb on + strand, within Ga0059261_4052at 4179.712 kb on + strand, within Ga0059261_4052at 4179.712 kb on + strand, within Ga0059261_4052at 4179.713 kb on - strand, within Ga0059261_4052at 4179.733 kb on + strand, within Ga0059261_4052at 4179.733 kb on + strand, within Ga0059261_4052at 4179.733 kb on + strand, within Ga0059261_4052at 4179.733 kb on + strand, within Ga0059261_4052at 4179.734 kb on - strand, within Ga0059261_4052at 4179.734 kb on - strand, within Ga0059261_4052at 4179.734 kb on - strand, within Ga0059261_4052at 4179.943 kb on + strand, within Ga0059261_4052at 4180.013 kb on - strand, within Ga0059261_4052at 4180.087 kb on + strand, within Ga0059261_4052at 4180.087 kb on + strand, within Ga0059261_4052at 4180.087 kb on + strand, within Ga0059261_4052at 4180.087 kb on + strand, within Ga0059261_4052at 4180.087 kb on + strand, within Ga0059261_4052at 4180.087 kb on + strand, within Ga0059261_4052at 4180.087 kb on + strand, within Ga0059261_4052at 4180.087 kb on + strand, within Ga0059261_4052at 4180.087 kb on + strand, within Ga0059261_4052at 4180.087 kb on + strand, within Ga0059261_4052at 4180.087 kb on + strand, within Ga0059261_4052at 4180.087 kb on + strand, within Ga0059261_4052at 4180.087 kb on + strand, within Ga0059261_4052at 4180.087 kb on + strand, within Ga0059261_4052at 4180.087 kb on + strand, within Ga0059261_4052at 4180.087 kb on + strand, within Ga0059261_4052at 4180.087 kb on + strand, within Ga0059261_4052at 4180.087 kb on + strand, within Ga0059261_4052at 4180.087 kb on + strand, within Ga0059261_4052at 4180.087 kb on + strand, within Ga0059261_4052at 4180.087 kb on + strand, within Ga0059261_4052at 4180.087 kb on + strand, within Ga0059261_4052at 4180.087 kb on + strand, within Ga0059261_4052at 4180.088 kb on - strand, within Ga0059261_4052at 4180.088 kb on - strand, within Ga0059261_4052at 4180.088 kb on - strand, within Ga0059261_4052at 4180.088 kb on - strand, within Ga0059261_4052at 4180.088 kb on - strand, within Ga0059261_4052at 4180.088 kb on - strand, within Ga0059261_4052at 4180.088 kb on - strand, within Ga0059261_4052at 4180.090 kb on - strand, within Ga0059261_4052at 4180.114 kb on + strand, within Ga0059261_4052at 4180.114 kb on + strand, within Ga0059261_4052at 4180.114 kb on + strand, within Ga0059261_4052at 4180.114 kb on + strand, within Ga0059261_4052at 4180.114 kb on + strand, within Ga0059261_4052at 4180.114 kb on + strand, within Ga0059261_4052at 4180.114 kb on + strand, within Ga0059261_4052at 4180.115 kb on - strand, within Ga0059261_4052at 4180.115 kb on - strand, within Ga0059261_4052at 4180.115 kb on - strand, within Ga0059261_4052at 4180.115 kb on - strand, within Ga0059261_4052at 4180.120 kb on + strand, within Ga0059261_4052at 4180.120 kb on + strand, within Ga0059261_4052at 4180.120 kb on + strand, within Ga0059261_4052at 4180.120 kb on + strand, within Ga0059261_4052at 4180.120 kb on + strand, within Ga0059261_4052at 4180.121 kb on - strand, within Ga0059261_4052at 4180.121 kb on - strand, within Ga0059261_4052at 4180.121 kb on - strand, within Ga0059261_4052at 4180.121 kb on - strand, within Ga0059261_4052at 4180.121 kb on - strandat 4180.249 kb on + strand, within Ga0059261_4052at 4180.249 kb on + strand, within Ga0059261_4052at 4180.249 kb on + strand, within Ga0059261_4052at 4180.250 kb on - strand, within Ga0059261_4052at 4180.251 kb on + strand, within Ga0059261_4052at 4180.251 kb on + strand, within Ga0059261_4052at 4180.251 kb on + strand, within Ga0059261_4052at 4180.251 kb on + strand, within Ga0059261_4052at 4180.251 kb on + strand, within Ga0059261_4052at 4180.252 kb on - strand, within Ga0059261_4052at 4180.509 kb on + strand, within Ga0059261_4053at 4180.509 kb on + strand, within Ga0059261_4053at 4180.509 kb on + strand, within Ga0059261_4053at 4180.510 kb on - strand, within Ga0059261_4053at 4180.510 kb on - strand, within Ga0059261_4053at 4180.715 kb on + strandat 4180.715 kb on + strandat 4180.715 kb on + strandat 4180.715 kb on + strandat 4180.716 kb on - strandat 4180.716 kb on - strandat 4180.716 kb on - strandat 4180.916 kb on + strand, within Ga0059261_4054at 4180.917 kb on - strand, within Ga0059261_4054at 4180.917 kb on - strand, within Ga0059261_4054at 4180.998 kb on - strand, within Ga0059261_4054at 4180.998 kb on - strand, within Ga0059261_4054at 4181.028 kb on + strandat 4181.028 kb on + strandat 4181.029 kb on - strandat 4181.029 kb on - strandat 4181.029 kb on - strandat 4181.029 kb on - strandat 4181.029 kb on - strandat 4181.350 kb on + strand, within Ga0059261_4055at 4181.350 kb on + strand, within Ga0059261_4055at 4181.350 kb on + strand, within Ga0059261_4055at 4181.350 kb on + strand, within Ga0059261_4055at 4181.350 kb on + strand, within Ga0059261_4055at 4181.350 kb on + strand, within Ga0059261_4055at 4181.350 kb on + strand, within Ga0059261_4055at 4181.350 kb on + strand, within Ga0059261_4055at 4181.350 kb on + strand, within Ga0059261_4055at 4181.350 kb on + strand, within Ga0059261_4055at 4181.351 kb on - strand, within Ga0059261_4055at 4181.351 kb on - strand, within Ga0059261_4055at 4181.351 kb on - strand, within Ga0059261_4055at 4181.351 kb on - strand, within Ga0059261_4055at 4181.351 kb on - strand, within Ga0059261_4055

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Per-strain Table

Position Strand Gene LocusTag Fraction Cholin acetate 40 mM
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4,178,234 + -1.1
4,178,235 - +0.0
4,178,235 - -0.3
4,178,235 - +0.6
4,178,413 + Ga0059261_4051 0.18 -0.3
4,178,469 + Ga0059261_4051 0.25 -1.9
4,178,469 + Ga0059261_4051 0.25 +1.3
4,178,469 + Ga0059261_4051 0.25 +0.5
4,178,470 - Ga0059261_4051 0.25 -1.4
4,178,510 + -0.1
4,178,511 - Ga0059261_4051 0.30 +0.8
4,178,511 - Ga0059261_4051 0.30 -0.1
4,179,120 + -0.7
4,179,120 + -1.1
4,179,121 - +0.3
4,179,121 - -0.1
4,179,132 - +0.2
4,179,132 - -1.5
4,179,180 + +0.1
4,179,180 + -0.0
4,179,180 + +0.5
4,179,181 - -0.1
4,179,185 + +0.0
4,179,487 + Ga0059261_4052 0.24 -0.7
4,179,488 - Ga0059261_4052 0.24 -0.7
4,179,488 - Ga0059261_4052 0.24 -0.0
4,179,488 - Ga0059261_4052 0.24 -0.4
4,179,488 - Ga0059261_4052 0.24 +0.7
4,179,488 - Ga0059261_4052 0.24 -0.8
4,179,556 + Ga0059261_4052 0.30 +0.3
4,179,556 + Ga0059261_4052 0.30 -0.8
4,179,556 + Ga0059261_4052 0.30 +0.4
4,179,556 + Ga0059261_4052 0.30 +0.1
4,179,557 - Ga0059261_4052 0.30 +0.9
4,179,671 - Ga0059261_4052 0.40 +0.5
4,179,671 - Ga0059261_4052 0.40 +0.5
4,179,671 - Ga0059261_4052 0.40 +0.6
4,179,671 - Ga0059261_4052 0.40 -0.7
4,179,712 + Ga0059261_4052 0.43 -0.3
4,179,712 + Ga0059261_4052 0.43 +1.0
4,179,712 + Ga0059261_4052 0.43 -0.5
4,179,712 + Ga0059261_4052 0.43 +0.5
4,179,713 - Ga0059261_4052 0.43 +0.1
4,179,733 + Ga0059261_4052 0.45 +0.4
4,179,733 + Ga0059261_4052 0.45 -0.6
4,179,733 + Ga0059261_4052 0.45 -0.3
4,179,733 + Ga0059261_4052 0.45 -0.0
4,179,734 - Ga0059261_4052 0.45 -0.4
4,179,734 - Ga0059261_4052 0.45 -2.6
4,179,734 - Ga0059261_4052 0.45 +1.6
4,179,943 + Ga0059261_4052 0.63 -0.0
4,180,013 - Ga0059261_4052 0.69 +0.6
4,180,087 + Ga0059261_4052 0.76 -0.6
4,180,087 + Ga0059261_4052 0.76 -0.6
4,180,087 + Ga0059261_4052 0.76 -0.4
4,180,087 + Ga0059261_4052 0.76 +0.2
4,180,087 + Ga0059261_4052 0.76 +0.2
4,180,087 + Ga0059261_4052 0.76 -0.9
4,180,087 + Ga0059261_4052 0.76 -1.1
4,180,087 + Ga0059261_4052 0.76 +0.1
4,180,087 + Ga0059261_4052 0.76 -0.5
4,180,087 + Ga0059261_4052 0.76 +0.4
4,180,087 + Ga0059261_4052 0.76 +0.1
4,180,087 + Ga0059261_4052 0.76 -0.3
4,180,087 + Ga0059261_4052 0.76 +0.5
4,180,087 + Ga0059261_4052 0.76 -0.0
4,180,087 + Ga0059261_4052 0.76 +0.0
4,180,087 + Ga0059261_4052 0.76 -1.5
4,180,087 + Ga0059261_4052 0.76 +0.3
4,180,087 + Ga0059261_4052 0.76 +1.0
4,180,087 + Ga0059261_4052 0.76 -0.5
4,180,087 + Ga0059261_4052 0.76 -0.0
4,180,087 + Ga0059261_4052 0.76 -0.7
4,180,087 + Ga0059261_4052 0.76 -0.5
4,180,087 + Ga0059261_4052 0.76 -0.1
4,180,088 - Ga0059261_4052 0.76 -0.5
4,180,088 - Ga0059261_4052 0.76 -1.7
4,180,088 - Ga0059261_4052 0.76 +0.3
4,180,088 - Ga0059261_4052 0.76 +0.0
4,180,088 - Ga0059261_4052 0.76 +0.1
4,180,088 - Ga0059261_4052 0.76 +0.7
4,180,088 - Ga0059261_4052 0.76 +0.1
4,180,090 - Ga0059261_4052 0.76 -0.6
4,180,114 + Ga0059261_4052 0.78 -0.3
4,180,114 + Ga0059261_4052 0.78 -0.1
4,180,114 + Ga0059261_4052 0.78 -1.1
4,180,114 + Ga0059261_4052 0.78 -0.7
4,180,114 + Ga0059261_4052 0.78 -0.7
4,180,114 + Ga0059261_4052 0.78 +0.0
4,180,114 + Ga0059261_4052 0.78 -1.0
4,180,115 - Ga0059261_4052 0.78 +0.7
4,180,115 - Ga0059261_4052 0.78 +0.2
4,180,115 - Ga0059261_4052 0.78 -0.1
4,180,115 - Ga0059261_4052 0.78 -1.7
4,180,120 + Ga0059261_4052 0.78 -1.4
4,180,120 + Ga0059261_4052 0.78 -0.3
4,180,120 + Ga0059261_4052 0.78 -0.4
4,180,120 + Ga0059261_4052 0.78 +0.5
4,180,120 + Ga0059261_4052 0.78 -0.0
4,180,121 - Ga0059261_4052 0.79 +0.2
4,180,121 - Ga0059261_4052 0.79 -0.5
4,180,121 - Ga0059261_4052 0.79 -0.1
4,180,121 - Ga0059261_4052 0.79 +1.2
4,180,121 - -0.1
4,180,249 + Ga0059261_4052 0.90 +0.5
4,180,249 + Ga0059261_4052 0.90 -0.6
4,180,249 + Ga0059261_4052 0.90 -1.1
4,180,250 - Ga0059261_4052 0.90 +0.9
4,180,251 + Ga0059261_4052 0.90 -0.6
4,180,251 + Ga0059261_4052 0.90 -0.4
4,180,251 + Ga0059261_4052 0.90 -0.7
4,180,251 + Ga0059261_4052 0.90 -0.4
4,180,251 + Ga0059261_4052 0.90 -0.2
4,180,252 - Ga0059261_4052 0.90 +1.9
4,180,509 + Ga0059261_4053 0.41 +0.3
4,180,509 + Ga0059261_4053 0.41 -1.1
4,180,509 + Ga0059261_4053 0.41 -0.2
4,180,510 - Ga0059261_4053 0.42 +0.2
4,180,510 - Ga0059261_4053 0.42 +0.2
4,180,715 + +0.3
4,180,715 + -0.8
4,180,715 + -0.5
4,180,715 + -0.0
4,180,716 - +0.7
4,180,716 - +0.9
4,180,716 - +1.7
4,180,916 + Ga0059261_4054 0.60 +1.0
4,180,917 - Ga0059261_4054 0.60 -0.0
4,180,917 - Ga0059261_4054 0.60 -0.1
4,180,998 - Ga0059261_4054 0.84 +1.3
4,180,998 - Ga0059261_4054 0.84 -0.9
4,181,028 + -0.4
4,181,028 + -0.2
4,181,029 - -0.0
4,181,029 - -0.3
4,181,029 - -1.6
4,181,029 - -0.3
4,181,029 - -0.8
4,181,350 + Ga0059261_4055 0.16 +0.7
4,181,350 + Ga0059261_4055 0.16 -1.9
4,181,350 + Ga0059261_4055 0.16 -1.2
4,181,350 + Ga0059261_4055 0.16 -1.0
4,181,350 + Ga0059261_4055 0.16 +0.9
4,181,350 + Ga0059261_4055 0.16 -1.9
4,181,350 + Ga0059261_4055 0.16 +0.2
4,181,350 + Ga0059261_4055 0.16 +0.8
4,181,350 + Ga0059261_4055 0.16 +1.7
4,181,350 + Ga0059261_4055 0.16 +0.9
4,181,351 - Ga0059261_4055 0.16 -0.7
4,181,351 - Ga0059261_4055 0.16 +0.1
4,181,351 - Ga0059261_4055 0.16 -0.7
4,181,351 - Ga0059261_4055 0.16 -1.4
4,181,351 - Ga0059261_4055 0.16 +0.8

Or see this region's nucleotide sequence