Experiment: Cholin acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0523 and Ga0059261_0524 overlap by 8 nucleotides Ga0059261_0524 and Ga0059261_0525 are separated by 160 nucleotides
Ga0059261_0523: Ga0059261_0523 - Uncharacterized protein conserved in bacteria, at 525,905 to 526,960
_0523
Ga0059261_0524: Ga0059261_0524 - 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase, at 526,953 to 527,627
_0524
Ga0059261_0525: Ga0059261_0525 - Transcriptional regulator, at 527,788 to 528,990
_0525
Position (kb) 526
527
528 Strain fitness (log2 ratio) -2
-1
0
1
2 at 526.229 kb on + strand, within Ga0059261_0523 at 526.326 kb on + strand, within Ga0059261_0523 at 526.326 kb on + strand, within Ga0059261_0523 at 526.327 kb on - strand, within Ga0059261_0523 at 526.583 kb on - strand, within Ga0059261_0523 at 526.734 kb on + strand, within Ga0059261_0523 at 526.734 kb on + strand, within Ga0059261_0523 at 526.734 kb on + strand, within Ga0059261_0523 at 526.734 kb on + strand, within Ga0059261_0523 at 526.734 kb on + strand, within Ga0059261_0523 at 526.735 kb on - strand, within Ga0059261_0523 at 526.735 kb on - strand, within Ga0059261_0523 at 526.735 kb on - strand, within Ga0059261_0523 at 526.735 kb on - strand, within Ga0059261_0523 at 526.735 kb on - strand, within Ga0059261_0523 at 526.735 kb on - strand, within Ga0059261_0523 at 526.735 kb on - strand, within Ga0059261_0523 at 526.735 kb on - strand, within Ga0059261_0523 at 526.735 kb on - strand, within Ga0059261_0523 at 526.773 kb on - strand at 526.905 kb on + strand at 526.906 kb on - strand at 526.961 kb on - strand at 526.961 kb on - strand at 526.961 kb on - strand at 526.961 kb on - strand at 526.999 kb on + strand at 526.999 kb on + strand at 526.999 kb on + strand at 526.999 kb on + strand at 526.999 kb on + strand at 526.999 kb on + strand at 527.350 kb on + strand, within Ga0059261_0524 at 527.351 kb on - strand, within Ga0059261_0524 at 527.492 kb on - strand, within Ga0059261_0524 at 527.506 kb on + strand, within Ga0059261_0524 at 527.506 kb on + strand, within Ga0059261_0524 at 527.506 kb on + strand, within Ga0059261_0524 at 527.506 kb on + strand, within Ga0059261_0524 at 527.506 kb on + strand, within Ga0059261_0524 at 527.506 kb on + strand, within Ga0059261_0524 at 527.506 kb on + strand, within Ga0059261_0524 at 527.506 kb on + strand, within Ga0059261_0524 at 527.507 kb on - strand, within Ga0059261_0524 at 527.507 kb on - strand, within Ga0059261_0524 at 527.507 kb on - strand, within Ga0059261_0524 at 527.507 kb on - strand, within Ga0059261_0524 at 527.507 kb on - strand, within Ga0059261_0524 at 527.507 kb on - strand, within Ga0059261_0524 at 527.507 kb on - strand, within Ga0059261_0524 at 527.591 kb on - strand at 527.610 kb on + strand at 527.610 kb on + strand at 527.658 kb on + strand at 527.659 kb on - strand at 527.687 kb on + strand at 527.687 kb on + strand at 527.688 kb on - strand at 527.691 kb on + strand at 527.691 kb on + strand at 527.692 kb on - strand at 527.692 kb on - strand at 527.692 kb on - strand at 527.692 kb on - strand at 527.692 kb on - strand at 527.742 kb on + strand at 527.779 kb on - strand at 528.025 kb on + strand, within Ga0059261_0525 at 528.026 kb on - strand, within Ga0059261_0525 at 528.197 kb on + strand, within Ga0059261_0525
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 40 mM remove 526,229 + Ga0059261_0523 0.31 -0.4 526,326 + Ga0059261_0523 0.40 -0.3 526,326 + Ga0059261_0523 0.40 -0.2 526,327 - Ga0059261_0523 0.40 -1.9 526,583 - Ga0059261_0523 0.64 -1.1 526,734 + Ga0059261_0523 0.79 -0.7 526,734 + Ga0059261_0523 0.79 -0.5 526,734 + Ga0059261_0523 0.79 -0.2 526,734 + Ga0059261_0523 0.79 +0.3 526,734 + Ga0059261_0523 0.79 -1.2 526,735 - Ga0059261_0523 0.79 -0.6 526,735 - Ga0059261_0523 0.79 +1.0 526,735 - Ga0059261_0523 0.79 +0.5 526,735 - Ga0059261_0523 0.79 -0.1 526,735 - Ga0059261_0523 0.79 -0.0 526,735 - Ga0059261_0523 0.79 -0.4 526,735 - Ga0059261_0523 0.79 +0.2 526,735 - Ga0059261_0523 0.79 -0.5 526,735 - Ga0059261_0523 0.79 +0.7 526,773 - +0.4 526,905 + +1.4 526,906 - -0.0 526,961 - -1.6 526,961 - -1.1 526,961 - -0.3 526,961 - +1.0 526,999 + +0.4 526,999 + +0.2 526,999 + -0.2 526,999 + +0.6 526,999 + +0.2 526,999 + +1.0 527,350 + Ga0059261_0524 0.59 -1.4 527,351 - Ga0059261_0524 0.59 +0.3 527,492 - Ga0059261_0524 0.80 -0.3 527,506 + Ga0059261_0524 0.82 -0.2 527,506 + Ga0059261_0524 0.82 -0.8 527,506 + Ga0059261_0524 0.82 -0.3 527,506 + Ga0059261_0524 0.82 +0.4 527,506 + Ga0059261_0524 0.82 -0.3 527,506 + Ga0059261_0524 0.82 -0.4 527,506 + Ga0059261_0524 0.82 -0.6 527,506 + Ga0059261_0524 0.82 +0.3 527,507 - Ga0059261_0524 0.82 -0.7 527,507 - Ga0059261_0524 0.82 -1.2 527,507 - Ga0059261_0524 0.82 -0.5 527,507 - Ga0059261_0524 0.82 -0.6 527,507 - Ga0059261_0524 0.82 -0.4 527,507 - Ga0059261_0524 0.82 +0.1 527,507 - Ga0059261_0524 0.82 +0.5 527,591 - -0.3 527,610 + -0.3 527,610 + +0.2 527,658 + +0.7 527,659 - +0.1 527,687 + +2.6 527,687 + -0.3 527,688 - -0.1 527,691 + +0.4 527,691 + -1.1 527,692 - -0.3 527,692 - +0.7 527,692 - +0.8 527,692 - +0.1 527,692 - -0.4 527,742 + -0.1 527,779 - +0.4 528,025 + Ga0059261_0525 0.20 +1.1 528,026 - Ga0059261_0525 0.20 -1.6 528,197 + Ga0059261_0525 0.34 -0.1
Or see this region's nucleotide sequence