Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02444 and CCNA_02445 are separated by 53 nucleotides CCNA_02445 and CCNA_02446 overlap by 4 nucleotides
CCNA_02444: CCNA_02444 - N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase, at 2,585,347 to 2,586,378
_02444
CCNA_02445: CCNA_02445 - copper homeostasis protein cutC, at 2,586,432 to 2,587,169
_02445
CCNA_02446: CCNA_02446 - glutathionylspermidine synthase family, at 2,587,166 to 2,588,329
_02446
Position (kb)
2586
2587
2588 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2585.499 kb on - strand, within CCNA_02444 at 2585.506 kb on - strand, within CCNA_02444 at 2585.547 kb on + strand, within CCNA_02444 at 2585.552 kb on + strand, within CCNA_02444 at 2585.630 kb on - strand, within CCNA_02444 at 2585.657 kb on + strand, within CCNA_02444 at 2585.657 kb on + strand, within CCNA_02444 at 2585.665 kb on - strand, within CCNA_02444 at 2585.672 kb on - strand, within CCNA_02444 at 2585.721 kb on - strand, within CCNA_02444 at 2585.745 kb on + strand, within CCNA_02444 at 2585.793 kb on - strand, within CCNA_02444 at 2585.815 kb on - strand, within CCNA_02444 at 2585.836 kb on + strand, within CCNA_02444 at 2585.841 kb on + strand, within CCNA_02444 at 2585.844 kb on - strand, within CCNA_02444 at 2585.844 kb on - strand, within CCNA_02444 at 2585.844 kb on - strand, within CCNA_02444 at 2585.905 kb on + strand at 2585.907 kb on + strand, within CCNA_02444 at 2585.913 kb on - strand, within CCNA_02444 at 2585.938 kb on + strand, within CCNA_02444 at 2585.940 kb on - strand, within CCNA_02444 at 2585.946 kb on - strand, within CCNA_02444 at 2586.146 kb on - strand, within CCNA_02444 at 2586.149 kb on + strand, within CCNA_02444 at 2586.206 kb on + strand, within CCNA_02444 at 2586.206 kb on + strand, within CCNA_02444 at 2586.206 kb on + strand, within CCNA_02444 at 2586.206 kb on + strand, within CCNA_02444 at 2586.206 kb on + strand, within CCNA_02444 at 2586.206 kb on + strand, within CCNA_02444 at 2586.206 kb on + strand, within CCNA_02444 at 2586.206 kb on + strand, within CCNA_02444 at 2586.206 kb on + strand, within CCNA_02444 at 2586.214 kb on - strand, within CCNA_02444 at 2586.214 kb on - strand, within CCNA_02444 at 2586.214 kb on - strand, within CCNA_02444 at 2586.214 kb on - strand, within CCNA_02444 at 2586.259 kb on + strand, within CCNA_02444 at 2586.259 kb on + strand, within CCNA_02444 at 2586.348 kb on - strand at 2586.363 kb on - strand at 2586.368 kb on - strand at 2586.394 kb on - strand at 2586.407 kb on + strand at 2586.461 kb on - strand at 2586.480 kb on + strand at 2586.540 kb on + strand, within CCNA_02445 at 2586.546 kb on + strand, within CCNA_02445 at 2586.546 kb on + strand, within CCNA_02445 at 2586.547 kb on + strand, within CCNA_02445 at 2586.548 kb on - strand, within CCNA_02445 at 2586.554 kb on - strand, within CCNA_02445 at 2586.583 kb on + strand, within CCNA_02445 at 2586.637 kb on + strand, within CCNA_02445 at 2586.660 kb on - strand, within CCNA_02445 at 2586.684 kb on + strand, within CCNA_02445 at 2586.684 kb on + strand, within CCNA_02445 at 2586.691 kb on + strand, within CCNA_02445 at 2586.691 kb on + strand, within CCNA_02445 at 2586.692 kb on - strand, within CCNA_02445 at 2586.692 kb on - strand, within CCNA_02445 at 2586.699 kb on - strand, within CCNA_02445 at 2586.726 kb on - strand, within CCNA_02445 at 2586.728 kb on + strand, within CCNA_02445 at 2586.736 kb on - strand, within CCNA_02445 at 2586.752 kb on - strand, within CCNA_02445 at 2586.784 kb on - strand, within CCNA_02445 at 2586.784 kb on - strand, within CCNA_02445 at 2586.784 kb on - strand, within CCNA_02445 at 2586.788 kb on + strand, within CCNA_02445 at 2586.796 kb on - strand, within CCNA_02445 at 2586.819 kb on + strand, within CCNA_02445 at 2586.827 kb on - strand, within CCNA_02445 at 2586.827 kb on - strand, within CCNA_02445 at 2586.827 kb on - strand, within CCNA_02445 at 2586.850 kb on + strand, within CCNA_02445 at 2586.914 kb on + strand, within CCNA_02445 at 2586.961 kb on - strand, within CCNA_02445 at 2586.964 kb on + strand, within CCNA_02445 at 2587.025 kb on - strand, within CCNA_02445 at 2587.030 kb on + strand, within CCNA_02445 at 2587.068 kb on - strand, within CCNA_02445 at 2587.102 kb on + strand at 2587.102 kb on + strand at 2587.117 kb on + strand at 2587.145 kb on + strand at 2587.172 kb on - strand at 2587.231 kb on - strand at 2587.333 kb on - strand, within CCNA_02446 at 2587.341 kb on + strand, within CCNA_02446 at 2587.341 kb on + strand, within CCNA_02446 at 2587.341 kb on + strand, within CCNA_02446 at 2587.349 kb on - strand, within CCNA_02446 at 2587.349 kb on - strand, within CCNA_02446 at 2587.385 kb on - strand, within CCNA_02446 at 2587.400 kb on - strand, within CCNA_02446 at 2587.400 kb on - strand, within CCNA_02446 at 2587.445 kb on + strand, within CCNA_02446 at 2587.478 kb on - strand, within CCNA_02446 at 2587.533 kb on - strand, within CCNA_02446 at 2587.543 kb on - strand, within CCNA_02446 at 2587.583 kb on - strand, within CCNA_02446 at 2587.583 kb on - strand, within CCNA_02446 at 2587.617 kb on - strand, within CCNA_02446 at 2587.624 kb on + strand, within CCNA_02446 at 2587.635 kb on + strand, within CCNA_02446 at 2587.635 kb on + strand, within CCNA_02446 at 2587.635 kb on + strand, within CCNA_02446 at 2587.635 kb on + strand, within CCNA_02446 at 2587.635 kb on + strand, within CCNA_02446 at 2587.636 kb on + strand, within CCNA_02446 at 2587.636 kb on - strand, within CCNA_02446 at 2587.636 kb on - strand, within CCNA_02446 at 2587.643 kb on - strand, within CCNA_02446 at 2587.643 kb on - strand, within CCNA_02446 at 2587.643 kb on - strand, within CCNA_02446 at 2587.643 kb on - strand, within CCNA_02446 at 2587.643 kb on - strand, within CCNA_02446 at 2587.643 kb on - strand, within CCNA_02446 at 2587.643 kb on - strand, within CCNA_02446 at 2587.753 kb on + strand, within CCNA_02446 at 2587.786 kb on - strand, within CCNA_02446 at 2587.836 kb on + strand, within CCNA_02446 at 2587.844 kb on - strand, within CCNA_02446 at 2587.844 kb on - strand, within CCNA_02446 at 2587.844 kb on - strand, within CCNA_02446 at 2587.844 kb on - strand, within CCNA_02446 at 2587.869 kb on + strand, within CCNA_02446 at 2587.869 kb on + strand, within CCNA_02446 at 2587.869 kb on + strand, within CCNA_02446 at 2587.879 kb on + strand, within CCNA_02446 at 2587.887 kb on - strand, within CCNA_02446 at 2587.942 kb on + strand, within CCNA_02446 at 2588.018 kb on - strand, within CCNA_02446 at 2588.029 kb on - strand, within CCNA_02446 at 2588.038 kb on - strand, within CCNA_02446 at 2588.055 kb on + strand, within CCNA_02446 at 2588.063 kb on - strand, within CCNA_02446 at 2588.063 kb on - strand, within CCNA_02446 at 2588.063 kb on - strand, within CCNA_02446 at 2588.093 kb on - strand, within CCNA_02446 at 2588.141 kb on - strand, within CCNA_02446 at 2588.143 kb on + strand, within CCNA_02446 at 2588.143 kb on + strand, within CCNA_02446 at 2588.143 kb on + strand, within CCNA_02446 at 2588.143 kb on + strand, within CCNA_02446 at 2588.143 kb on + strand, within CCNA_02446 at 2588.143 kb on + strand, within CCNA_02446 at 2588.143 kb on + strand, within CCNA_02446 at 2588.143 kb on + strand, within CCNA_02446 at 2588.143 kb on + strand, within CCNA_02446 at 2588.143 kb on + strand, within CCNA_02446 at 2588.143 kb on + strand, within CCNA_02446 at 2588.143 kb on + strand, within CCNA_02446 at 2588.143 kb on + strand, within CCNA_02446 at 2588.143 kb on + strand, within CCNA_02446 at 2588.151 kb on - strand, within CCNA_02446 at 2588.151 kb on - strand, within CCNA_02446 at 2588.151 kb on - strand, within CCNA_02446 at 2588.151 kb on - strand, within CCNA_02446 at 2588.151 kb on - strand, within CCNA_02446 at 2588.151 kb on - strand, within CCNA_02446 at 2588.151 kb on - strand, within CCNA_02446 at 2588.151 kb on - strand, within CCNA_02446 at 2588.151 kb on - strand, within CCNA_02446 at 2588.151 kb on - strand, within CCNA_02446 at 2588.151 kb on - strand, within CCNA_02446 at 2588.151 kb on - strand, within CCNA_02446 at 2588.151 kb on - strand, within CCNA_02446 at 2588.151 kb on - strand, within CCNA_02446 at 2588.151 kb on - strand, within CCNA_02446 at 2588.151 kb on - strand, within CCNA_02446 at 2588.151 kb on - strand, within CCNA_02446 at 2588.151 kb on - strand, within CCNA_02446 at 2588.151 kb on - strand, within CCNA_02446 at 2588.151 kb on - strand, within CCNA_02446 at 2588.151 kb on - strand, within CCNA_02446 at 2588.151 kb on - strand, within CCNA_02446 at 2588.151 kb on - strand, within CCNA_02446 at 2588.151 kb on - strand, within CCNA_02446 at 2588.151 kb on - strand, within CCNA_02446 at 2588.151 kb on - strand, within CCNA_02446 at 2588.151 kb on - strand, within CCNA_02446 at 2588.151 kb on - strand, within CCNA_02446 at 2588.151 kb on - strand, within CCNA_02446 at 2588.156 kb on - strand, within CCNA_02446 at 2588.159 kb on + strand, within CCNA_02446
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 2,585,499 - CCNA_02444 0.15 +1.9 2,585,506 - CCNA_02444 0.15 +0.4 2,585,547 + CCNA_02444 0.19 -0.4 2,585,552 + CCNA_02444 0.20 +1.6 2,585,630 - CCNA_02444 0.27 -0.4 2,585,657 + CCNA_02444 0.30 -1.7 2,585,657 + CCNA_02444 0.30 -0.1 2,585,665 - CCNA_02444 0.31 -0.1 2,585,672 - CCNA_02444 0.31 -3.1 2,585,721 - CCNA_02444 0.36 -0.6 2,585,745 + CCNA_02444 0.39 -1.1 2,585,793 - CCNA_02444 0.43 -0.1 2,585,815 - CCNA_02444 0.45 -1.0 2,585,836 + CCNA_02444 0.47 -1.1 2,585,841 + CCNA_02444 0.48 -0.0 2,585,844 - CCNA_02444 0.48 -1.2 2,585,844 - CCNA_02444 0.48 -1.2 2,585,844 - CCNA_02444 0.48 -0.8 2,585,905 + +0.7 2,585,907 + CCNA_02444 0.54 -1.1 2,585,913 - CCNA_02444 0.55 -0.3 2,585,938 + CCNA_02444 0.57 -0.7 2,585,940 - CCNA_02444 0.57 -2.9 2,585,946 - CCNA_02444 0.58 -0.8 2,586,146 - CCNA_02444 0.77 -1.4 2,586,149 + CCNA_02444 0.78 +0.1 2,586,206 + CCNA_02444 0.83 -1.4 2,586,206 + CCNA_02444 0.83 +0.2 2,586,206 + CCNA_02444 0.83 +0.0 2,586,206 + CCNA_02444 0.83 -1.8 2,586,206 + CCNA_02444 0.83 +0.3 2,586,206 + CCNA_02444 0.83 +0.4 2,586,206 + CCNA_02444 0.83 -2.4 2,586,206 + CCNA_02444 0.83 -0.6 2,586,206 + CCNA_02444 0.83 -0.4 2,586,214 - CCNA_02444 0.84 -1.1 2,586,214 - CCNA_02444 0.84 +0.7 2,586,214 - CCNA_02444 0.84 +1.4 2,586,214 - CCNA_02444 0.84 +0.6 2,586,259 + CCNA_02444 0.88 -0.7 2,586,259 + CCNA_02444 0.88 -1.5 2,586,348 - +0.3 2,586,363 - +0.0 2,586,368 - +1.3 2,586,394 - -0.4 2,586,407 + -0.7 2,586,461 - +0.4 2,586,480 + +3.0 2,586,540 + CCNA_02445 0.15 -0.7 2,586,546 + CCNA_02445 0.15 -0.7 2,586,546 + CCNA_02445 0.15 +0.4 2,586,547 + CCNA_02445 0.16 -1.4 2,586,548 - CCNA_02445 0.16 +0.0 2,586,554 - CCNA_02445 0.17 +0.1 2,586,583 + CCNA_02445 0.20 -0.6 2,586,637 + CCNA_02445 0.28 -0.5 2,586,660 - CCNA_02445 0.31 +0.1 2,586,684 + CCNA_02445 0.34 -0.2 2,586,684 + CCNA_02445 0.34 -1.8 2,586,691 + CCNA_02445 0.35 +2.0 2,586,691 + CCNA_02445 0.35 +0.1 2,586,692 - CCNA_02445 0.35 -1.8 2,586,692 - CCNA_02445 0.35 -0.6 2,586,699 - CCNA_02445 0.36 -0.8 2,586,726 - CCNA_02445 0.40 -0.2 2,586,728 + CCNA_02445 0.40 +0.1 2,586,736 - CCNA_02445 0.41 -2.2 2,586,752 - CCNA_02445 0.43 -1.1 2,586,784 - CCNA_02445 0.48 +2.4 2,586,784 - CCNA_02445 0.48 -1.1 2,586,784 - CCNA_02445 0.48 -0.5 2,586,788 + CCNA_02445 0.48 -0.6 2,586,796 - CCNA_02445 0.49 +0.8 2,586,819 + CCNA_02445 0.52 +0.4 2,586,827 - CCNA_02445 0.54 +1.0 2,586,827 - CCNA_02445 0.54 +1.2 2,586,827 - CCNA_02445 0.54 +0.0 2,586,850 + CCNA_02445 0.57 -0.7 2,586,914 + CCNA_02445 0.65 -2.1 2,586,961 - CCNA_02445 0.72 -0.5 2,586,964 + CCNA_02445 0.72 +0.5 2,587,025 - CCNA_02445 0.80 -0.8 2,587,030 + CCNA_02445 0.81 -1.0 2,587,068 - CCNA_02445 0.86 -0.6 2,587,102 + -1.6 2,587,102 + +0.4 2,587,117 + +3.0 2,587,145 + +0.2 2,587,172 - -0.3 2,587,231 - -0.4 2,587,333 - CCNA_02446 0.14 +0.5 2,587,341 + CCNA_02446 0.15 -0.3 2,587,341 + CCNA_02446 0.15 -1.3 2,587,341 + CCNA_02446 0.15 -0.0 2,587,349 - CCNA_02446 0.16 +0.7 2,587,349 - CCNA_02446 0.16 +0.6 2,587,385 - CCNA_02446 0.19 -0.5 2,587,400 - CCNA_02446 0.20 -0.0 2,587,400 - CCNA_02446 0.20 +0.8 2,587,445 + CCNA_02446 0.24 -0.5 2,587,478 - CCNA_02446 0.27 +0.7 2,587,533 - CCNA_02446 0.32 -1.4 2,587,543 - CCNA_02446 0.32 -0.5 2,587,583 - CCNA_02446 0.36 -0.9 2,587,583 - CCNA_02446 0.36 +0.0 2,587,617 - CCNA_02446 0.39 +0.7 2,587,624 + CCNA_02446 0.39 +0.2 2,587,635 + CCNA_02446 0.40 -3.9 2,587,635 + CCNA_02446 0.40 -2.4 2,587,635 + CCNA_02446 0.40 -1.2 2,587,635 + CCNA_02446 0.40 -0.7 2,587,635 + CCNA_02446 0.40 -1.3 2,587,636 + CCNA_02446 0.40 -1.2 2,587,636 - CCNA_02446 0.40 -1.2 2,587,636 - CCNA_02446 0.40 +1.8 2,587,643 - CCNA_02446 0.41 +0.2 2,587,643 - CCNA_02446 0.41 -0.8 2,587,643 - CCNA_02446 0.41 +1.1 2,587,643 - CCNA_02446 0.41 +0.4 2,587,643 - CCNA_02446 0.41 -0.6 2,587,643 - CCNA_02446 0.41 -0.9 2,587,643 - CCNA_02446 0.41 +0.6 2,587,753 + CCNA_02446 0.50 -1.8 2,587,786 - CCNA_02446 0.53 +1.0 2,587,836 + CCNA_02446 0.58 +0.2 2,587,844 - CCNA_02446 0.58 +0.5 2,587,844 - CCNA_02446 0.58 +0.6 2,587,844 - CCNA_02446 0.58 -0.4 2,587,844 - CCNA_02446 0.58 +0.1 2,587,869 + CCNA_02446 0.60 -0.6 2,587,869 + CCNA_02446 0.60 +0.2 2,587,869 + CCNA_02446 0.60 +0.2 2,587,879 + CCNA_02446 0.61 -0.8 2,587,887 - CCNA_02446 0.62 +0.8 2,587,942 + CCNA_02446 0.67 -0.1 2,588,018 - CCNA_02446 0.73 -1.1 2,588,029 - CCNA_02446 0.74 -1.9 2,588,038 - CCNA_02446 0.75 +0.2 2,588,055 + CCNA_02446 0.76 -1.5 2,588,063 - CCNA_02446 0.77 +1.4 2,588,063 - CCNA_02446 0.77 +0.6 2,588,063 - CCNA_02446 0.77 -3.1 2,588,093 - CCNA_02446 0.80 -0.7 2,588,141 - CCNA_02446 0.84 +0.6 2,588,143 + CCNA_02446 0.84 -1.0 2,588,143 + CCNA_02446 0.84 -1.2 2,588,143 + CCNA_02446 0.84 -1.8 2,588,143 + CCNA_02446 0.84 -0.7 2,588,143 + CCNA_02446 0.84 +0.0 2,588,143 + CCNA_02446 0.84 -0.6 2,588,143 + CCNA_02446 0.84 -0.9 2,588,143 + CCNA_02446 0.84 +0.0 2,588,143 + CCNA_02446 0.84 -0.9 2,588,143 + CCNA_02446 0.84 +0.4 2,588,143 + CCNA_02446 0.84 -0.8 2,588,143 + CCNA_02446 0.84 -0.7 2,588,143 + CCNA_02446 0.84 -1.5 2,588,143 + CCNA_02446 0.84 -0.6 2,588,151 - CCNA_02446 0.85 +1.0 2,588,151 - CCNA_02446 0.85 +0.2 2,588,151 - CCNA_02446 0.85 -0.2 2,588,151 - CCNA_02446 0.85 -0.1 2,588,151 - CCNA_02446 0.85 +0.4 2,588,151 - CCNA_02446 0.85 +0.4 2,588,151 - CCNA_02446 0.85 +0.2 2,588,151 - CCNA_02446 0.85 -0.4 2,588,151 - CCNA_02446 0.85 -0.6 2,588,151 - CCNA_02446 0.85 +1.1 2,588,151 - CCNA_02446 0.85 +0.7 2,588,151 - CCNA_02446 0.85 -1.4 2,588,151 - CCNA_02446 0.85 -0.1 2,588,151 - CCNA_02446 0.85 +0.5 2,588,151 - CCNA_02446 0.85 +0.0 2,588,151 - CCNA_02446 0.85 +0.8 2,588,151 - CCNA_02446 0.85 +0.9 2,588,151 - CCNA_02446 0.85 +0.6 2,588,151 - CCNA_02446 0.85 -1.2 2,588,151 - CCNA_02446 0.85 +0.1 2,588,151 - CCNA_02446 0.85 +1.6 2,588,151 - CCNA_02446 0.85 +0.3 2,588,151 - CCNA_02446 0.85 +0.3 2,588,151 - CCNA_02446 0.85 +0.8 2,588,151 - CCNA_02446 0.85 +1.1 2,588,151 - CCNA_02446 0.85 +0.7 2,588,151 - CCNA_02446 0.85 +0.2 2,588,151 - CCNA_02446 0.85 +1.2 2,588,151 - CCNA_02446 0.85 +0.8 2,588,156 - CCNA_02446 0.85 -0.1 2,588,159 + CCNA_02446 0.85 +0.4
Or see this region's nucleotide sequence