Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS24905 and CA265_RS24910 are separated by 143 nucleotides CA265_RS24910 and CA265_RS24915 are separated by 361 nucleotides
CA265_RS24905: CA265_RS24905 - lipoyl synthase, at 6,073,637 to 6,074,530
_RS24905
CA265_RS24910: CA265_RS24910 - GNAT family N-acetyltransferase, at 6,074,674 to 6,075,105
_RS24910
CA265_RS24915: CA265_RS24915 - cysteine--tRNA ligase, at 6,075,467 to 6,076,927
_RS24915
Position (kb)
6074
6075
6076 Strain fitness (log2 ratio)
-1
0
1 at 6074.562 kb on + strand at 6074.563 kb on - strand at 6074.764 kb on - strand, within CA265_RS24910 at 6074.909 kb on - strand, within CA265_RS24910 at 6074.976 kb on + strand, within CA265_RS24910 at 6075.049 kb on - strand, within CA265_RS24910 at 6075.049 kb on - strand, within CA265_RS24910 at 6075.053 kb on - strand, within CA265_RS24910 at 6075.053 kb on - strand, within CA265_RS24910 at 6075.107 kb on + strand at 6075.108 kb on - strand at 6075.121 kb on - strand at 6075.124 kb on + strand at 6075.125 kb on - strand at 6075.182 kb on + strand at 6075.182 kb on + strand at 6075.191 kb on + strand at 6075.302 kb on + strand at 6075.323 kb on + strand at 6075.323 kb on + strand at 6075.324 kb on - strand at 6075.332 kb on + strand at 6075.332 kb on + strand at 6075.333 kb on - strand at 6075.365 kb on + strand at 6075.375 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 6,074,562 + -0.0 6,074,563 - +0.7 6,074,764 - CA265_RS24910 0.21 +0.6 6,074,909 - CA265_RS24910 0.54 +0.6 6,074,976 + CA265_RS24910 0.70 +0.2 6,075,049 - CA265_RS24910 0.87 +0.7 6,075,049 - CA265_RS24910 0.87 +0.4 6,075,053 - CA265_RS24910 0.88 +1.2 6,075,053 - CA265_RS24910 0.88 -0.1 6,075,107 + -0.4 6,075,108 - +0.9 6,075,121 - -0.6 6,075,124 + -0.3 6,075,125 - -0.1 6,075,182 + -0.3 6,075,182 + -0.1 6,075,191 + -0.8 6,075,302 + -0.1 6,075,323 + +1.0 6,075,323 + -0.1 6,075,324 - -0.3 6,075,332 + +0.4 6,075,332 + +0.7 6,075,333 - -0.3 6,075,365 + -0.5 6,075,375 + +0.2
Or see this region's nucleotide sequence