Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS24195 and CA265_RS24200 are separated by 167 nucleotides CA265_RS24200 and CA265_RS24205 are separated by 52 nucleotides CA265_RS24205 and CA265_RS24210 are separated by 25 nucleotides
CA265_RS24195: CA265_RS24195 - TetR family transcriptional regulator, at 5,895,406 to 5,896,017
_RS24195
CA265_RS24200: CA265_RS24200 - fatty acid hydroxylase, at 5,896,185 to 5,896,628
_RS24200
CA265_RS24205: CA265_RS24205 - hypothetical protein, at 5,896,681 to 5,897,370
_RS24205
CA265_RS24210: CA265_RS24210 - hypothetical protein, at 5,897,396 to 5,898,550
_RS24210
Position (kb) 5896
5897
5898 Strain fitness (log2 ratio) -1
0
1
2 at 5895.700 kb on + strand, within CA265_RS24195 at 5895.726 kb on - strand, within CA265_RS24195 at 5895.728 kb on + strand, within CA265_RS24195 at 5895.800 kb on + strand, within CA265_RS24195 at 5895.856 kb on - strand, within CA265_RS24195 at 5895.860 kb on - strand, within CA265_RS24195 at 5895.881 kb on + strand, within CA265_RS24195 at 5895.923 kb on - strand, within CA265_RS24195 at 5895.943 kb on - strand, within CA265_RS24195 at 5895.972 kb on + strand at 5896.152 kb on + strand at 5896.152 kb on + strand at 5896.155 kb on - strand at 5896.157 kb on - strand at 5896.253 kb on + strand, within CA265_RS24200 at 5896.289 kb on + strand, within CA265_RS24200 at 5896.383 kb on + strand, within CA265_RS24200 at 5896.388 kb on - strand, within CA265_RS24200 at 5896.439 kb on - strand, within CA265_RS24200 at 5896.506 kb on - strand, within CA265_RS24200 at 5896.541 kb on + strand, within CA265_RS24200 at 5896.694 kb on + strand at 5896.773 kb on + strand, within CA265_RS24205 at 5896.774 kb on - strand, within CA265_RS24205 at 5896.789 kb on + strand, within CA265_RS24205 at 5896.789 kb on + strand, within CA265_RS24205 at 5896.795 kb on + strand, within CA265_RS24205 at 5896.842 kb on - strand, within CA265_RS24205 at 5896.846 kb on - strand, within CA265_RS24205 at 5896.919 kb on - strand, within CA265_RS24205 at 5896.919 kb on - strand, within CA265_RS24205 at 5896.950 kb on + strand, within CA265_RS24205 at 5897.127 kb on + strand, within CA265_RS24205 at 5897.195 kb on + strand, within CA265_RS24205 at 5897.200 kb on + strand, within CA265_RS24205 at 5897.201 kb on - strand, within CA265_RS24205 at 5897.201 kb on - strand, within CA265_RS24205 at 5897.203 kb on + strand, within CA265_RS24205 at 5897.244 kb on + strand, within CA265_RS24205 at 5897.245 kb on - strand, within CA265_RS24205 at 5897.257 kb on - strand, within CA265_RS24205 at 5897.316 kb on + strand at 5897.346 kb on + strand at 5897.408 kb on + strand at 5897.452 kb on - strand at 5897.559 kb on + strand, within CA265_RS24210 at 5897.578 kb on + strand, within CA265_RS24210 at 5897.579 kb on - strand, within CA265_RS24210 at 5897.606 kb on + strand, within CA265_RS24210 at 5897.680 kb on + strand, within CA265_RS24210 at 5897.705 kb on + strand, within CA265_RS24210 at 5897.763 kb on + strand, within CA265_RS24210 at 5897.769 kb on + strand, within CA265_RS24210 at 5897.770 kb on - strand, within CA265_RS24210 at 5897.770 kb on - strand, within CA265_RS24210 at 5897.770 kb on - strand, within CA265_RS24210 at 5897.774 kb on - strand, within CA265_RS24210 at 5897.774 kb on - strand, within CA265_RS24210 at 5897.774 kb on - strand, within CA265_RS24210 at 5897.941 kb on - strand, within CA265_RS24210 at 5897.970 kb on + strand, within CA265_RS24210 at 5897.970 kb on + strand, within CA265_RS24210 at 5897.970 kb on + strand, within CA265_RS24210 at 5897.972 kb on + strand, within CA265_RS24210 at 5897.988 kb on - strand, within CA265_RS24210 at 5898.022 kb on - strand, within CA265_RS24210 at 5898.026 kb on - strand, within CA265_RS24210 at 5898.107 kb on - strand, within CA265_RS24210 at 5898.111 kb on + strand, within CA265_RS24210 at 5898.185 kb on + strand, within CA265_RS24210 at 5898.186 kb on - strand, within CA265_RS24210 at 5898.192 kb on + strand, within CA265_RS24210 at 5898.192 kb on + strand, within CA265_RS24210 at 5898.213 kb on - strand, within CA265_RS24210 at 5898.216 kb on + strand, within CA265_RS24210 at 5898.275 kb on - strand, within CA265_RS24210 at 5898.275 kb on - strand, within CA265_RS24210 at 5898.278 kb on - strand, within CA265_RS24210 at 5898.290 kb on - strand, within CA265_RS24210 at 5898.293 kb on + strand, within CA265_RS24210 at 5898.319 kb on + strand, within CA265_RS24210 at 5898.320 kb on - strand, within CA265_RS24210
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 5,895,700 + CA265_RS24195 0.48 -0.1 5,895,726 - CA265_RS24195 0.52 +0.0 5,895,728 + CA265_RS24195 0.53 -0.5 5,895,800 + CA265_RS24195 0.64 -0.0 5,895,856 - CA265_RS24195 0.74 -0.0 5,895,860 - CA265_RS24195 0.74 +0.4 5,895,881 + CA265_RS24195 0.78 +0.3 5,895,923 - CA265_RS24195 0.84 +0.1 5,895,943 - CA265_RS24195 0.88 -0.3 5,895,972 + +0.3 5,896,152 + +0.6 5,896,152 + -0.0 5,896,155 - -1.1 5,896,157 - -0.1 5,896,253 + CA265_RS24200 0.15 +0.2 5,896,289 + CA265_RS24200 0.23 +0.8 5,896,383 + CA265_RS24200 0.45 -0.7 5,896,388 - CA265_RS24200 0.46 -0.1 5,896,439 - CA265_RS24200 0.57 -0.8 5,896,506 - CA265_RS24200 0.72 -0.0 5,896,541 + CA265_RS24200 0.80 +0.1 5,896,694 + +0.4 5,896,773 + CA265_RS24205 0.13 +0.6 5,896,774 - CA265_RS24205 0.13 +1.2 5,896,789 + CA265_RS24205 0.16 +0.4 5,896,789 + CA265_RS24205 0.16 -0.6 5,896,795 + CA265_RS24205 0.17 -0.6 5,896,842 - CA265_RS24205 0.23 -0.6 5,896,846 - CA265_RS24205 0.24 +0.1 5,896,919 - CA265_RS24205 0.34 +0.5 5,896,919 - CA265_RS24205 0.34 -0.2 5,896,950 + CA265_RS24205 0.39 -0.8 5,897,127 + CA265_RS24205 0.65 +0.4 5,897,195 + CA265_RS24205 0.74 +0.4 5,897,200 + CA265_RS24205 0.75 +0.2 5,897,201 - CA265_RS24205 0.75 -0.1 5,897,201 - CA265_RS24205 0.75 -0.5 5,897,203 + CA265_RS24205 0.76 +0.7 5,897,244 + CA265_RS24205 0.82 +1.2 5,897,245 - CA265_RS24205 0.82 +0.4 5,897,257 - CA265_RS24205 0.83 +0.2 5,897,316 + -0.6 5,897,346 + +0.1 5,897,408 + -0.6 5,897,452 - +0.2 5,897,559 + CA265_RS24210 0.14 -0.0 5,897,578 + CA265_RS24210 0.16 +0.9 5,897,579 - CA265_RS24210 0.16 +1.1 5,897,606 + CA265_RS24210 0.18 +0.6 5,897,680 + CA265_RS24210 0.25 +0.1 5,897,705 + CA265_RS24210 0.27 -0.3 5,897,763 + CA265_RS24210 0.32 -0.6 5,897,769 + CA265_RS24210 0.32 -0.5 5,897,770 - CA265_RS24210 0.32 +0.5 5,897,770 - CA265_RS24210 0.32 -0.4 5,897,770 - CA265_RS24210 0.32 -0.2 5,897,774 - CA265_RS24210 0.33 -0.4 5,897,774 - CA265_RS24210 0.33 +1.1 5,897,774 - CA265_RS24210 0.33 +0.2 5,897,941 - CA265_RS24210 0.47 +0.5 5,897,970 + CA265_RS24210 0.50 -0.7 5,897,970 + CA265_RS24210 0.50 -0.7 5,897,970 + CA265_RS24210 0.50 -0.2 5,897,972 + CA265_RS24210 0.50 -0.2 5,897,988 - CA265_RS24210 0.51 -0.9 5,898,022 - CA265_RS24210 0.54 +0.2 5,898,026 - CA265_RS24210 0.55 -0.6 5,898,107 - CA265_RS24210 0.62 -0.2 5,898,111 + CA265_RS24210 0.62 -0.6 5,898,185 + CA265_RS24210 0.68 -0.6 5,898,186 - CA265_RS24210 0.68 -0.6 5,898,192 + CA265_RS24210 0.69 +0.5 5,898,192 + CA265_RS24210 0.69 +0.4 5,898,213 - CA265_RS24210 0.71 +2.3 5,898,216 + CA265_RS24210 0.71 -0.6 5,898,275 - CA265_RS24210 0.76 -0.2 5,898,275 - CA265_RS24210 0.76 +0.3 5,898,278 - CA265_RS24210 0.76 +0.8 5,898,290 - CA265_RS24210 0.77 -0.3 5,898,293 + CA265_RS24210 0.78 +0.1 5,898,319 + CA265_RS24210 0.80 +0.3 5,898,320 - CA265_RS24210 0.80 -0.3
Or see this region's nucleotide sequence