Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS22855 and CA265_RS22860 are separated by 178 nucleotides CA265_RS22860 and CA265_RS22865 are separated by 17 nucleotides
CA265_RS22855: CA265_RS22855 - hypothetical protein, at 5,595,895 to 5,596,299
_RS22855
CA265_RS22860: CA265_RS22860 - hypothetical protein, at 5,596,478 to 5,596,693
_RS22860
CA265_RS22865: CA265_RS22865 - ABC transporter ATP-binding protein, at 5,596,711 to 5,598,462
_RS22865
Position (kb) 5596
5597 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5595.510 kb on + strand at 5595.510 kb on + strand at 5595.515 kb on + strand at 5595.545 kb on + strand at 5595.547 kb on + strand at 5595.547 kb on + strand at 5595.636 kb on + strand at 5595.647 kb on + strand at 5595.687 kb on + strand at 5595.709 kb on - strand at 5595.711 kb on + strand at 5595.711 kb on + strand at 5595.789 kb on - strand at 5595.850 kb on - strand at 5595.880 kb on - strand at 5595.893 kb on + strand at 5596.141 kb on + strand, within CA265_RS22855 at 5596.284 kb on + strand at 5596.290 kb on + strand at 5596.328 kb on + strand at 5596.329 kb on - strand at 5596.329 kb on - strand at 5596.329 kb on - strand at 5596.333 kb on - strand at 5596.333 kb on - strand at 5596.400 kb on + strand at 5596.400 kb on + strand at 5596.400 kb on + strand at 5596.490 kb on - strand at 5596.597 kb on + strand, within CA265_RS22860 at 5596.597 kb on + strand, within CA265_RS22860 at 5596.616 kb on + strand, within CA265_RS22860 at 5596.634 kb on + strand, within CA265_RS22860 at 5596.635 kb on - strand, within CA265_RS22860 at 5596.685 kb on + strand at 5596.693 kb on + strand at 5596.693 kb on + strand at 5596.694 kb on - strand at 5596.703 kb on - strand at 5596.760 kb on + strand at 5596.959 kb on + strand, within CA265_RS22865 at 5596.959 kb on + strand, within CA265_RS22865 at 5597.093 kb on - strand, within CA265_RS22865 at 5597.179 kb on + strand, within CA265_RS22865 at 5597.234 kb on - strand at 5597.271 kb on + strand, within CA265_RS22865 at 5597.276 kb on - strand, within CA265_RS22865 at 5597.303 kb on - strand, within CA265_RS22865 at 5597.314 kb on + strand, within CA265_RS22865 at 5597.328 kb on + strand, within CA265_RS22865 at 5597.395 kb on - strand, within CA265_RS22865 at 5597.395 kb on - strand, within CA265_RS22865 at 5597.402 kb on - strand, within CA265_RS22865 at 5597.413 kb on - strand, within CA265_RS22865 at 5597.523 kb on + strand, within CA265_RS22865 at 5597.571 kb on + strand, within CA265_RS22865 at 5597.658 kb on + strand, within CA265_RS22865
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 5,595,510 + +0.4 5,595,510 + -0.3 5,595,515 + +0.2 5,595,545 + -0.3 5,595,547 + -0.1 5,595,547 + -0.2 5,595,636 + -0.1 5,595,647 + +0.3 5,595,687 + +0.3 5,595,709 - -1.8 5,595,711 + -0.4 5,595,711 + -0.2 5,595,789 - -0.2 5,595,850 - -1.0 5,595,880 - -0.4 5,595,893 + +0.8 5,596,141 + CA265_RS22855 0.61 +0.5 5,596,284 + -0.4 5,596,290 + +0.4 5,596,328 + -0.4 5,596,329 - -1.3 5,596,329 - -1.0 5,596,329 - -0.4 5,596,333 - -1.0 5,596,333 - +0.4 5,596,400 + +0.3 5,596,400 + -1.1 5,596,400 + +1.1 5,596,490 - +0.4 5,596,597 + CA265_RS22860 0.55 +0.2 5,596,597 + CA265_RS22860 0.55 +0.8 5,596,616 + CA265_RS22860 0.64 +0.1 5,596,634 + CA265_RS22860 0.72 +0.6 5,596,635 - CA265_RS22860 0.73 -0.7 5,596,685 + +0.3 5,596,693 + -0.2 5,596,693 + +1.3 5,596,694 - -0.1 5,596,703 - +0.0 5,596,760 + +0.4 5,596,959 + CA265_RS22865 0.14 -0.9 5,596,959 + CA265_RS22865 0.14 +0.4 5,597,093 - CA265_RS22865 0.22 -1.7 5,597,179 + CA265_RS22865 0.27 -0.7 5,597,234 - +2.1 5,597,271 + CA265_RS22865 0.32 -0.0 5,597,276 - CA265_RS22865 0.32 -0.1 5,597,303 - CA265_RS22865 0.34 +0.9 5,597,314 + CA265_RS22865 0.34 +0.0 5,597,328 + CA265_RS22865 0.35 +0.4 5,597,395 - CA265_RS22865 0.39 -0.6 5,597,395 - CA265_RS22865 0.39 +0.4 5,597,402 - CA265_RS22865 0.39 -0.9 5,597,413 - CA265_RS22865 0.40 +0.1 5,597,523 + CA265_RS22865 0.46 +0.2 5,597,571 + CA265_RS22865 0.49 +0.5 5,597,658 + CA265_RS22865 0.54 +0.7
Or see this region's nucleotide sequence